Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,367,008 – 9,367,116 |
Length | 108 |
Max. P | 0.500000 |
Location | 9,367,008 – 9,367,116 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 79.21 |
Mean single sequence MFE | -29.72 |
Consensus MFE | -18.71 |
Energy contribution | -17.72 |
Covariance contribution | -0.99 |
Combinations/Pair | 1.39 |
Mean z-score | -1.33 |
Structure conservation index | 0.63 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9367008 108 - 20766785 GCACAGCCGCGAUCAAUAAGCUUCUGUUUUUCGGAGCGAUGAAUGAAACCUUUAUAGCCAAGG------CUAUUUCUCUGAUGGUUUGGUGGGAUUUCAAUAUCGUUCGGAUCA ..((((..((.........))..))))...((.((((((((..((((((((.....((((((.------(((((.....)))))))))))))).))))).)))))))).))... ( -30.80) >DroSec_CAF1 36989 108 - 1 GCACAGCCGCGAUCAAUGAGCUUCUGUUUUUCAGAGCGAUGAAUGAAGCCUCUAUAGCAAAGC------CUAUUUCUCUGAUGGUUUGGUGGGAUUUCAAUAUCGUUCGGAUCA ((......))((((...((((....))))....((((((((..((((((((.....((.((((------(.(((.....)))))))).))))).))))).)))))))).)))). ( -26.90) >DroSim_CAF1 40338 108 - 1 GCACAGCCGCGAUCAAUGAGCUUCUGUUUUUCGGAGCGAUGAAUGAAGCCUCUAUAGCCAAGC------CUAUUUCUCUGAUGGUUUGGUGGGAUUUCCAUAUCGUUCGGAUCA ((......))((((...((((....))))....((((((((...(((((((.....(((((((------(.(((.....)))))))))))))).))))..)))))))).)))). ( -32.00) >DroEre_CAF1 37699 108 - 1 GCACAGCCCCGAUCAACAAGUUUCUGCUGUUCGGAACGAUGAAUGAAACCUCUAUAGCCGAGG------CUAUUUCCUUGACGGUUUGGUGGGAUUUCAAUAUCGUUCUGAUCA ..(((((...(((......)))...)))))(((((((((((..(((((((((((.((((((((------......)))...)))))))).))).))))).)))))))))))... ( -32.80) >DroWil_CAF1 50771 111 - 1 UGACA---ACGUCCAUUCAAUUUCCGUUUCUCAGAAUGAUGUAUAAAUCCUUUGUAACCGUAGCCACAUCUAUCGGGUUUACGUUUCGGGGGCAUUUCCACAUCAUUCUGUUCA .((.(---(((.............)))))).(((((((((((..((((((((((.((.(((((((.(.......))).))))).)))))))).))))..))))))))))).... ( -28.42) >DroYak_CAF1 40432 108 - 1 GCACAGCCCCGAUCAAUAAGUUUCUGCUUUUCGGAGCGAUGAAUGAAACCUCUAUAGCCGAGG------CUAUUCACUUGACGAUUUGGCGGGAUUUCAAUAUCGUUCUGAUCA ..........((((...((((....))))...(((((((((..(((((..(((...((((((.------....((....))...)))))).)))))))).))))))))))))). ( -27.40) >consensus GCACAGCCGCGAUCAAUAAGCUUCUGUUUUUCGGAGCGAUGAAUGAAACCUCUAUAGCCAAGG______CUAUUUCUCUGACGGUUUGGUGGGAUUUCAAUAUCGUUCGGAUCA ..........((((...((((....))))....((((((((...((((((((((.(((((.....................)))))))).))).))))..)))))))).)))). (-18.71 = -17.72 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:28 2006