Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,354,132 – 9,354,230 |
Length | 98 |
Max. P | 0.963473 |
Location | 9,354,132 – 9,354,230 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 79.96 |
Mean single sequence MFE | -20.32 |
Consensus MFE | -15.90 |
Energy contribution | -17.70 |
Covariance contribution | 1.80 |
Combinations/Pair | 1.14 |
Mean z-score | -2.15 |
Structure conservation index | 0.78 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963473 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9354132 98 + 20766785 U--GAUC-AAAUAUUCCGACCAUAGGUUUGUGGUUUCCCGAAAACUAU-AACCAAAUGGGUGGAAACAAACAAAACCCUUCCAUAUCGAACUUAUUUAUUA---------C (--(((.-(((((...(((((((.((((.(((((((.....)))))))-))))..))))((((((.............)))))).)))....)))))))))---------. ( -19.12) >DroSec_CAF1 24311 99 + 1 U--UAUC-AAAAAUUCCGACCAUAGGUUUGUGGUUUCCCGAAAACUAUGAACCAAAUGGGUGGAAACAAACAAAACCCUUCCAUAUCGAGCUUAUUUAUUA---------C .--....-........(((((((.((((..((((((.....))))))..))))..))))((((((.............)))))).))).............---------. ( -22.02) >DroSim_CAF1 26019 99 + 1 U--UAUC-AAAAAUUCCGACCAUAGGUCUGUGGUUUCCCGAAAACUAUGAACCAAAUGGGUGGAAACAAACAAAACCCUUCCAUAUCGAGCUUAUUUAUUG---------C .--....-........(((((((.(((..(((((((.....)))))))..)))..))))((((((.............)))))).))).............---------. ( -19.22) >DroEre_CAF1 24654 109 + 1 U--UAUCAAGAAAUUCCGACCAUAGGUUUGUGGUUUACCAAAAACUUUAAGCCAAAUGGGUGGAAGCAAACAAAACCCUACCUUGUUGAGCUAAUUUAUUACUCACUAUGU .--......((...((((.((((.((((((.(((((.....))))).))))))..)))).))))(((.(((((.........)))))..)))..........))....... ( -21.90) >DroYak_CAF1 27431 102 + 1 UAUGAGUUAAAAAUUCCGACUAUUGGUU---------CCCAAAACUAUGAACCAAAUGGGUGGAAACAAACAAAACCCUUCCAUAUAACGCUAAUUUAUUACUCACUAUAC ..(((((...(((((.((.(((((((((---------(..........))))).)))))((((((.............))))))....))..)))))...)))))...... ( -19.32) >consensus U__UAUC_AAAAAUUCCGACCAUAGGUUUGUGGUUUCCCGAAAACUAUGAACCAAAUGGGUGGAAACAAACAAAACCCUUCCAUAUCGAGCUUAUUUAUUA_________C .............(((((.((((.((((((((((((.....))))))))))))..)))).))))).............................................. (-15.90 = -17.70 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:27 2006