Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,351,016 – 9,351,115 |
Length | 99 |
Max. P | 0.661510 |
Location | 9,351,016 – 9,351,115 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 87.79 |
Mean single sequence MFE | -21.44 |
Consensus MFE | -18.85 |
Energy contribution | -18.50 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.20 |
Mean z-score | -1.52 |
Structure conservation index | 0.88 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661510 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9351016 99 + 20766785 CGAUCUUUUAUAGGCACCGGC-----AAACUCUCCUUCUGAUUGCAAACGCAAAUAGAAGUUUAC-----CAAAGCGACUUACUUUCGCAAGAAAAGUGCAAAUACUCG .............((((.((.-----(((((.....((((.((((....)))).))))))))).)-----)...((((.......)))).......))))......... ( -21.60) >DroSec_CAF1 21192 99 + 1 CGAUCUUUUAUAGGCACCGGC-----AAACUCUCCUUCUGAUUGCAAACGCAAAUAGAAGUUUAC-----CAUAGCGACUUACUUUCGCAAGAAAAGUGCAAAUACUCG .............((((.((.-----(((((.....((((.((((....)))).))))))))).)-----)...((((.......)))).......))))......... ( -21.60) >DroSim_CAF1 22866 99 + 1 CGAUCUUUUAUAGGCACCGGC-----AAACUCUCCUUCUGAUUGCAAACGCAAAUAGAAGUUUAC-----CAUAGCGACUUACUUUCGCAAGAAAAGUGCAAAUACUCG .............((((.((.-----(((((.....((((.((((....)))).))))))))).)-----)...((((.......)))).......))))......... ( -21.60) >DroEre_CAF1 21370 93 + 1 CGAUCUUUUAUAGGCACCGGC-----A-ACUCUCCUUCUGAUUGCAAACGCAAAUAGAACUUUAC-----CAUGGCGACUUACUUUCGCAAGAAAAGUGCAAAU----- .............((((((.(-----(-.......(((((.((((....)))).)))))......-----..)).))......((((....)))).))))....----- ( -20.16) >DroYak_CAF1 24337 94 + 1 CGAUCUUUUAUAGGCACCGGC-----A-ACUCUCCUUCUGAUUGCAAACGCAAAUAGAAGCUUACC----CAUAGCGACUUACUUUCGCAAGAAAAGUGCAAAU----- .............((((.(..-----.-.)(((.((((((.((((....)))).))))))......----....((((.......)))).)))...))))....----- ( -21.00) >DroAna_CAF1 21286 104 + 1 CGGUCUUUUAUAGGCGUUUGGGGACGGAACUCUUCUUCUGAUUGAAAAAGCAAACAGAAGUUUACCAUACCAUACCGACUUACUUUCGCAAGAAAAGUGCAAAU----- ((((....(((.((..((((....))))......((((((.(((......))).))))))....)))))....))))...(((((((....).)))))).....----- ( -22.70) >consensus CGAUCUUUUAUAGGCACCGGC_____AAACUCUCCUUCUGAUUGCAAACGCAAAUAGAAGUUUAC_____CAUAGCGACUUACUUUCGCAAGAAAAGUGCAAAU_____ .............((((..((.............((((((.((((....)))).))))))..............)).......((((....)))).))))......... (-18.85 = -18.50 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:26 2006