Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,348,005 – 9,348,113 |
Length | 108 |
Max. P | 0.999027 |
Location | 9,348,005 – 9,348,113 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 93.69 |
Mean single sequence MFE | -27.67 |
Consensus MFE | -25.42 |
Energy contribution | -25.22 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.14 |
Mean z-score | -2.12 |
Structure conservation index | 0.92 |
SVM decision value | 3.33 |
SVM RNA-class probability | 0.999027 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9348005 108 + 20766785 CCAUACUAUAUAGCCAUGAGAUCCCUAUGAUACAUUUUCAACGGAUUUCCGCGAAAUUCCGGCGGAAGUGGAGCUGCUAGCAUGGCUGAUAUACAUAAAUCUUCCUAA ......((((((((((((((((((...(((.......)))..))))))).((....(((((.(....))))))......)))))))).)))))............... ( -27.20) >DroSec_CAF1 18121 108 + 1 CCAUACUAUAUAGCCAAGAGAUCCCUAAGAUACAUUUUCAACGGAUUUCCGCGAAAUUCCGGUGGAAGUGGAGCUGCUAGCAUGGCUGAUAUACAUAAAUCUUCCUAA ......((((((((((................((((((((.((((((((...)))).)))).))))))))..((.....)).))))).)))))............... ( -25.20) >DroSim_CAF1 19791 108 + 1 CCAUACUAUAUAGCCAUGAGAUCCCUAAGAUACAUUUUCAACGGAUUUCCGCGAAAUUCCGGCGGAAGUGGAGCUGCUAGCAUGGCUGAUAUACAUAAAUCUUCCUAA ......((((((((((((.........((...(((((((..((((((((...)))).))))..)))))))...)).....))))))).)))))............... ( -27.04) >DroEre_CAF1 18445 106 + 1 CCAUACUAUACAGCCAUG--AUCCCUAAGAAACAUUUUCAACGGAUUUCCACGAAAUUCUGGCGGAAGUGGAGCUGCUAGCAUGGCUGAUAUACAUAAAUCUUCCUAA ......((((((((((((--.......((...(((((((..((((((((...)))).))))..)))))))...)).....)))))))).))))............... ( -27.90) >DroYak_CAF1 21346 104 + 1 CCAUACUAUGCAGCCAUG--AUCCCUAAGAAACACUUUCAUCGGAUUUCCACGAAAUUCUGGCGGAAGUGGAGCUGCUAGCAUGGCUGAUAU--AUAAAUCUUCCUAA ......((((((((((((--.......((...(((((((..((((((((...)))).))))..)))))))...)).....)))))))).)))--)............. ( -31.00) >consensus CCAUACUAUAUAGCCAUGAGAUCCCUAAGAUACAUUUUCAACGGAUUUCCGCGAAAUUCCGGCGGAAGUGGAGCUGCUAGCAUGGCUGAUAUACAUAAAUCUUCCUAA ......((((((((((((.........((...(((((((..((((((((...)))).))))..)))))))...)).....)))))))).))))............... (-25.42 = -25.22 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:24 2006