Locus 2649

Sequence ID 2R_DroMel_CAF1
Location 9,346,105 – 9,346,209
Length 104
Max. P 0.891673
window4361

overview

Window 1

Location 9,346,105 – 9,346,209
Length 104
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 80.00
Mean single sequence MFE -23.91
Consensus MFE -15.70
Energy contribution -19.07
Covariance contribution 3.38
Combinations/Pair 1.09
Mean z-score -2.07
Structure conservation index 0.66
SVM decision value 0.97
SVM RNA-class probability 0.891673
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9346105 104 - 20766785
AUUUACAUAUGUACAUA--AAUGCGGCUUAAAUUGGAUUAGAUACGAUUAAAUUUAGCCACUUUGGAAUUGGGUUUGAUCGGCAGAUUGCCAAUUUCUAUGCAUAA
.................--.(((((....(((((((........((((((((((((.((.....))...))))))))))))........)))))))...))))).. ( -24.49)
>DroSec_CAF1 16286 104 - 1
AUUUACAUAUGCACAUA--AGUGCGGCUUAAAUUGGAUUAGAUACGAUUAAAUUUAGCCAUUUGGGAAUUGGCUUUGAUCGGCAGAUUGCCAAUUUCUAUGCAUAA
.......((((((....--.....((((.(((((.((((......)))).)))))))))...(((((((((((...((((....))))))))))))))))))))). ( -30.90)
>DroSim_CAF1 17969 104 - 1
AUUUACAUAUGCACAUA--AAUGCGGCUUAAAUUGGAUUAGAUACGAUUAAAUUUAGCCAUUUGGGAAUUGGCUUUGAUCGGCAGAUUGCCAAUUUCUAUGCAUAA
.......((((((....--.....((((.(((((.((((......)))).)))))))))...(((((((((((...((((....))))))))))))))))))))). ( -30.90)
>DroEre_CAF1 16582 84 - 1
AUUUACAUACGUACAUAUU---GAGGCUAAAAUGGGAUUAA---CGAUUAAAUUUUGCAUUUUGUGAAUUGGCAUUGAACG-----------AUUUA-A----UAC
.........(((.((..(.---.(..((((((((.((....---..........)).))))))).)..)..)...)).)))-----------.....-.----... (  -9.34)
>consensus
AUUUACAUAUGCACAUA__AAUGCGGCUUAAAUUGGAUUAGAUACGAUUAAAUUUAGCCAUUUGGGAAUUGGCUUUGAUCGGCAGAUUGCCAAUUUCUAUGCAUAA
.......((((((...........(((.((((((.((((......)))).)))))))))...(((((((((((...((((....))))))))))))))))))))). (-15.70 = -19.07 +   3.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:22 2006