Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,344,293 – 9,344,383 |
Length | 90 |
Max. P | 0.797238 |
Location | 9,344,293 – 9,344,383 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 73.41 |
Mean single sequence MFE | -26.97 |
Consensus MFE | -11.96 |
Energy contribution | -11.60 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.40 |
Mean z-score | -1.97 |
Structure conservation index | 0.44 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.797238 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9344293 90 + 20766785 AUGGGAUGACAAUGUAAUUACUUGAGUGGCCAGGAAAUUGGCUGUUCA--AAUUCAAAGUGAAGUCACCGCG--G--GGGUCGAAAAGU-------------GGGUCUA ...(((((((...........(((((..(((((....)))))..))))--).(((.....)))))).((((.--.--..........))-------------)))))). ( -24.90) >DroSec_CAF1 14491 90 + 1 AUGGGAUGACAAUGUAAUUACUUGAGUGGCCAGGAAAUUGGCUGUUCA--AAUUCAAAGUGAAGUCACCGCG--G--CGGUCGCAGAGG-------------GGUUCUA .(((((((((...........(((((..(((((....)))))..))))--).(((.....)))))).((...--(--(....))...))-------------.)))))) ( -26.10) >DroSim_CAF1 15005 90 + 1 AUGGGAUGACAAUGUAAUUACUUGAGUGGCCAGGAAAUUGGCUGUUCA--AAUUCAAAGUGAAGUCACCGCG--G--GGGUCGCAGAGG-------------GGGUCUA ...((.((((...........(((((..(((((....)))))..))))--).(((.....)))))))))...--.--((..(.(....)-------------.)..)). ( -26.00) >DroEre_CAF1 14645 103 + 1 AUGGGAUGACAAUGUAAUUACUUGAGUGGCCAGGAAAUUGGCUGUUUA--AGCCCAAAGUGAAGUCACAGCG--G--GCCUCCAAAAGGGGGGUCUAAAAUGGGGUCUA .......(((..........((((((..(((((....)))))..))))--))((((..(((....)))...(--(--((((((.....))))))))....))))))).. ( -39.00) >DroYak_CAF1 17466 102 + 1 AUGGGAUGACAAUGUAAUUACUUGAGUGGCCAGGAAAUUGGCUGUUUA--AACUCAAAGUGAAGCCACAGCG--G--GCGUUCAAAAGGGGG-UUCAAUAGGGGGUCUA ...((((..(...........(((((..(((((....)))))..))))--).(((....(((((((......--)--)).))))....))).-........)..)))). ( -27.10) >DroAna_CAF1 14267 94 + 1 AUG--UUCAAAAGCCAAUUACUUAAGUGCUUGGGUAAUUGCAUAUUUAGGAAUUUUAAGUGGGAUUACUAUCCAGAUAUGUCAAAGGAU-------------GGUUCUU ..(--(((....((.((((((((((....)))))))))))).(((((((.....))))))))))).(((((((............))))-------------))).... ( -18.70) >consensus AUGGGAUGACAAUGUAAUUACUUGAGUGGCCAGGAAAUUGGCUGUUCA__AAUUCAAAGUGAAGUCACCGCG__G__GGGUCGAAAAGG_____________GGGUCUA .......(((............((((..(((((....)))))..))))..........(((....)))....................................))).. (-11.96 = -11.60 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:19 2006