Locus 2646

Sequence ID 2R_DroMel_CAF1
Location 9,340,259 – 9,340,366
Length 107
Max. P 0.567429
window4357

overview

Window 7

Location 9,340,259 – 9,340,366
Length 107
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 80.72
Mean single sequence MFE -20.06
Consensus MFE -12.55
Energy contribution -13.38
Covariance contribution 0.84
Combinations/Pair 1.33
Mean z-score -1.58
Structure conservation index 0.63
SVM decision value 0.07
SVM RNA-class probability 0.567429
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9340259 107 - 20766785
CGACCCAAAACAUAUGAAAAGUGUGAAUUAAAGGACAAUAAAGAUAUAAAUCAUUAAUUAAGCUUUGAGCAAGCGCGAAAAGUACGCGAAAUCAACGUUUUGCAA-----------AA-
.....((((((......(((((...((((((.((...(((....)))...)).))))))..)))))((.....((((.......))))...))...))))))...-----------..- ( -15.40)
>DroVir_CAF1 21285 118 - 1
CAUAUAAAAAUAUUGAUAAAGUGCGCAUAAAUGAACAAUAUAGCAAUUAAUCAAUAAUUCAACGCUGAAAAUACGCAAAAAGUACGCAAAUUUUGCCACU-GAAAAGUAGCAACGAAAA
..........(((((((.((.(((..................))).)).))))))).(((..............((.........)).....((((.(((-....))).)))).))).. ( -16.47)
>DroSec_CAF1 10471 107 - 1
CGACCGAAAACAUAUGAAAAGUGUGAAUUAAAGGACAAUCAAGCGAUAAAUCAUUAAUUAAGCGUUGAGCAAUCGCGAAAAGUACGCGAAAUCGACGUUUUACAG-----------AA-
..........(((((.....)))))((((((.((...(((....)))...)).))))))(((((((((....(((((.......)))))..))))))))).....-----------..- ( -20.80)
>DroSim_CAF1 10918 107 - 1
CGACCGAAAACAUAUGAAAAGUGUGAAUUAAAGGACAAUCAAGCGUUAAAUCAUUAAUUAAGCGUUGAGCAAGCGCGAAAAGUACGCGAAAUCGACGUUUUGCAA-----------AA-
...((.((..(((((.....)))))..))...))........(((((((....))))).(((((((((.....((((.......))))...))))))))).))..-----------..- ( -20.20)
>DroEre_CAF1 10730 107 - 1
CGACCGAAAACAUACGAAAAGUGUGAAUCAAAGAACAAUCCAGCGAUAAAUCAUUAAUUGAGCGUUGAGCAAGCGCGAAAAGUACGCGAAAUCGACGUUUUGCAA-----------AA-
..........(((((.....))))).................((((....(((.....)))(((((((.....((((.......))))...))))))).))))..-----------..- ( -22.90)
>DroYak_CAF1 13511 107 - 1
CGACCGAAAACAUACGAAAAGUGUGAAUCAAAGGACAAUCCAGCGAUAAAUCAUUAAUUGAGCGUUGAGCAAGCGCGAAAAGUACGCGAAAUCGACGUUUUGCAA-----------AA-
..........(((((.....))))).......((.....)).((((....(((.....)))(((((((.....((((.......))))...))))))).))))..-----------..- ( -24.60)
>consensus
CGACCGAAAACAUAUGAAAAGUGUGAAUUAAAGGACAAUCAAGCGAUAAAUCAUUAAUUAAGCGUUGAGCAAGCGCGAAAAGUACGCGAAAUCGACGUUUUGCAA___________AA_
..........(((((.....)))))..................................(((((((((.....((((.......))))...)))))))))................... (-12.55 = -13.38 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:18 2006