Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,332,438 – 9,332,539 |
Length | 101 |
Max. P | 0.662484 |
Location | 9,332,438 – 9,332,539 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 82.33 |
Mean single sequence MFE | -30.08 |
Consensus MFE | -21.82 |
Energy contribution | -21.77 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.12 |
Mean z-score | -1.68 |
Structure conservation index | 0.73 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662484 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9332438 101 + 20766785 ----UCAUAAUCUUAAUGGAAUUCCCAACUGCAGAAAGCAACUCAGAGAUCCUGGUGACCGCCAGUCAUGCCGUUUUCCACAAUGAGGGCGGCAAGACUGCACCG ----.....(((((..(((.....)))..(((.....))).....)))))...((((.....(((((.((((((((((......)))))))))).))))))))). ( -32.50) >DroSec_CAF1 2729 101 + 1 ----UCAUUAUCUUAAUGGAAUUCCCAACUGCAGAAAGCAACUCAGAGAUCCUGGUGACCGCCAGUCAUGCUGUUUUCCACAAUGAGGGCGGCAAGACUGCACCG ----.............(((.(((.....(((.....))).....))).))).((((.....(((((.((((((((((......)))))))))).))))))))). ( -30.30) >DroSim_CAF1 2753 101 + 1 ----UCAUAAUCUCACUUGUCUUUCCAACUGCAGAAAGCAACUCAGAGAUCCUGGUGACCGCCAGUCAUGCCGUUUUCCACAAUGAGGGCGGCAAGACUGCACCG ----.....(((((..(((.(((((........))))))))....)))))...((((.....(((((.((((((((((......)))))))))).))))))))). ( -34.60) >DroEre_CAF1 2806 105 + 1 AGCACUAUAAUCAUGCUGGACUUCCCAACUGCAGAGAGCAACUCAGAGAUCCUGGUGACCGCCAGCCAUGCCGUCUUCCACAAUGAGGGCGGCAAGACCGCGCCG .((...........(((((...(((((....(.(((.....))).)......))).))...)))))..((((((((((......)))))))))).....)).... ( -32.20) >DroYak_CAF1 5475 105 + 1 AACAACAUAAUCACACUUGACUUCCCCACUGCAGAGAGCAACUCAGAGAUCCUGGUGACCGCCAGUCAUGCCGUCUUCCACAAUGAGGGCGGCAAGACGGCACCG ..........((((.(..((.(((.....(((.....))).....))).))..)))))..(((.(((.((((((((((......)))))))))).)))))).... ( -34.40) >DroPer_CAF1 3100 93 + 1 ----UAAUCGUCUCUUUGUCA--------UUUAGAAAGCAACUCUGAGAUCCUUGUAACUGCCAGUCAUGCCAUCUUCCAUAAUGAGGGCGGCAAAUCCGCACCG ----..............(((--------((.(((..(((...(((................)))...)))..))).....)))))((((((.....)))).)). ( -16.49) >consensus ____UCAUAAUCUCACUGGAAUUCCCAACUGCAGAAAGCAACUCAGAGAUCCUGGUGACCGCCAGUCAUGCCGUCUUCCACAAUGAGGGCGGCAAGACUGCACCG .....................................((............(((((....)))))...((((((((((......)))))))))).....)).... (-21.82 = -21.77 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:15 2006