Locus 2643

Sequence ID 2R_DroMel_CAF1
Location 9,332,087 – 9,332,200
Length 113
Max. P 0.939871
window4353

overview

Window 3

Location 9,332,087 – 9,332,200
Length 113
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 77.41
Mean single sequence MFE -34.62
Consensus MFE -23.58
Energy contribution -23.75
Covariance contribution 0.17
Combinations/Pair 1.24
Mean z-score -1.89
Structure conservation index 0.68
SVM decision value 1.30
SVM RNA-class probability 0.939871
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9332087 113 + 20766785
---CUCAAUGCAUCUAUUUGCACAGAAACGAAUUCAAGCAGCGUUUUGGCGUCACCGUCGCCUUUUUGGCCACCCACAGUGGUCUCACCCGCUGGCAUGAGUUCCACUCGAAUGCU
---.((..((((......))))..))...(((((((.((((((....((((.......)))).....((((((.....)))))).....)))).)).)))))))............ ( -34.10)
>DroVir_CAF1 2771 114 + 1
UAUAUC--GAUUUCUGUUCCAACAGACACGAAUUCAAGCAGCGAUUUGGCAUCACCGUCGCCUUUCUGGCCACGCACAGUGGGCUAACACGCUGGCAUGAGUUUCAUUCGAAUAUG
....((--((..(((((....)))))...(((((((.((((((..(((((.(((((((.(((.....))).)))....)))))))))..)))).)).)))))))...))))..... ( -36.40)
>DroPse_CAF1 2782 106 + 1
---CCCU-UUUAUCUGUUGGCUUAGAAACGAAUUCAAGCAGCGUUUUGGCGUCACCGUCGCCUUCCUGGCCACCCACAGCGGCCUCACACGCUGGCACGAGUUCAACUUG------
---....-....((((......))))...((((((..(((((((...((((.......)))).....((((.(.....).))))....))))).))..))))))......------ ( -29.90)
>DroGri_CAF1 2798 114 + 1
UAUCCU--CGUUUCUGUUUUAACAGACACGAAUUCAAGCAGAGAUUUGGGAUCACCGUCGCCUUUUUGGCCACGCACAGUGGUUUGACCCGCUGGCACGAGUUCCACUCGAAUAUG
.....(--(((.(((((....))))).)))).........(((...(((((((...((.(((.....))).))((.((((((......))))))))..)).))))))))....... ( -35.30)
>DroMoj_CAF1 2507 114 + 1
UAUCUC--GAUUUCUGUUCCAACAGACACGAAUUCAAGCAGCGCUUUGGCAUCACCGUCGCCUUUCUGGCCACGCACAGUGGUCUGACCCGCUGGCACGAGUUCCACUCGAACAUG
....((--((..(((((....)))))...((((((..((((((..(..(.((((((((.(((.....))).)))....))))))..)..)))).))..))))))...))))..... ( -34.40)
>DroAna_CAF1 2436 113 + 1
---CGAUUCCCUUUCGUUUAAACAGGAACGAAUUCAAGCAGCGCUUCGGCGUCACUUUGGCCUUUCUGGCCACCCACAGUGGCCUCACCCGCUGGCACGAGUUCCAUUCCAACGGA
---.........((((((......((((.(((((((((..((((....))))..)))(((((.....)))))....((((((......))))))....))))))..)))))))))) ( -37.60)
>consensus
___CUC__CAUUUCUGUUUCAACAGAAACGAAUUCAAGCAGCGAUUUGGCAUCACCGUCGCCUUUCUGGCCACCCACAGUGGUCUCACCCGCUGGCACGAGUUCCACUCGAAUAUG
............((((......))))...((((((..((((((....(((.........))).....((((((.....)))))).....)))).))..))))))............ (-23.58 = -23.75 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:14 2006