Locus 2642

Sequence ID 2R_DroMel_CAF1
Location 9,331,126 – 9,331,223
Length 97
Max. P 0.906755
window4352

overview

Window 2

Location 9,331,126 – 9,331,223
Length 97
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 81.17
Mean single sequence MFE -26.42
Consensus MFE -17.63
Energy contribution -17.15
Covariance contribution -0.48
Combinations/Pair 1.15
Mean z-score -2.16
Structure conservation index 0.67
SVM decision value 1.05
SVM RNA-class probability 0.906755
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9331126 97 - 20766785
UAAAGGAGGUUU-UCAGUGGUCCAAUCAAUUUGGUGUU------------UGCA-AGCCUCCAUUUUGAUCCAUAACUUCGAUCGAUUUUUAAUUUUAAAAGAAAUUCUAA
....((((((((-.(((....((((.....))))...)------------)).)-)))))))...((((((.........))))))......................... ( -21.80)
>DroSec_CAF1 1423 97 - 1
UAAAGGAGGUUU-UCAGUGGCCCAAUCAAUUUGGUGUU------------UGCA-AGCCUCCUUAUCGAUCCAUAACUUCGAUCGAUUUUUAAUUAUAAUAGAAAUUCUAA
..((((((((((-.(((..((((((.....)))).)))------------)).)-)))))))))(((((((.........)))))))............(((.....))). ( -26.80)
>DroSim_CAF1 1446 97 - 1
UAAAGGAGGUUU-UCAGUGGCCCAAUCAAUUUGGUGUU------------UGCA-AGCCUCCAUUUCGAUCCAUAGUUUUGAUCGAUGUUCGAUUAUAAUAGAAAUUCUAA
....((((((((-.(((..((((((.....)))).)))------------)).)-))))))).............(((.((((((.....)))))).)))........... ( -24.60)
>DroEre_CAF1 1464 109 - 1
UAAUGGGGGUUU-UUAGUGGCCCAAUCAAUUUGGUGUUGCCCUUUAAAUCUGCA-AGCCUCCAUUUCGAUCCAUAGCUGCGAUCGAUGCUUAAUUAUAUGAGGAAUUCUGA
.(((((((((((-.(((.(((((((.....))))....)))........))).)-))))))))))((((((((....)).))))))(.((((......)))).)....... ( -27.90)
>DroYak_CAF1 4144 111 - 1
UAAAGGAGGUUUUUUGGUGGCCCAAUCAAUUUGGUGUUGGCCUUUAACUUUGCAAAGCCUCCAUUUCGAUCCAUAGUUCUGAUCGAUGUUUAAUCAUAAGGGGAAUUGUGA
....(((((((((..(((((((..(((.....)))...))))....)))....))))))))).........(((((((((.....(((......)))....))))))))). ( -31.00)
>consensus
UAAAGGAGGUUU_UCAGUGGCCCAAUCAAUUUGGUGUU____________UGCA_AGCCUCCAUUUCGAUCCAUAGCUUCGAUCGAUGUUUAAUUAUAAGAGAAAUUCUAA
....(((((((.......(((((((.....)))).))).................)))))))...((((((.........))))))......................... (-17.63 = -17.15 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:13 2006