| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,328,331 – 9,328,433 |
| Length | 102 |
| Max. P | 0.554671 |
| Location | 9,328,331 – 9,328,433 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 86.05 |
| Mean single sequence MFE | -16.48 |
| Consensus MFE | -14.01 |
| Energy contribution | -13.95 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.554671 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9328331 102 + 20766785 UACGAAUUCACAGCUCAUUAAUCUAACGACCGAUAUAAAUCCGGCUGCGAAAAUAAACCUUCAAGUUGUGAGUAAAUUGUAUUCUAAAUCAAAAA--UCA-------AAAC (((((((((((((((......((....))(((.........)))...................))))))))))...)))))..............--...-------.... ( -15.60) >DroGri_CAF1 2701 108 + 1 UACAAAUUCACAGCUCAUUAAUCUAACGACCGAUAUAAAUCCGGCUGCGAAAAUAAACCUUCAAGUUGUGAGUAAAUUGUUU-UUAAGUCUAAGCAACAACAACUGCAA-- .((((((((((((((......((....))(((.........)))...................))))))))))...))))..-..........(((........)))..-- ( -16.60) >DroEre_CAF1 2490 101 + 1 UACGAAUUCACAGCUCAUUAAUCUAACGACCGAUAUAAAUCCGGCUGCGAAAAUAAACCUUCAAGUUGUGAGUAAAUUGUAU-CUAAAUCAAAAU--UCA-------AAAC (((((((((((((((......((....))(((.........)))...................))))))))))...))))).-............--...-------.... ( -15.60) >DroMoj_CAF1 2629 105 + 1 UACAAAUUCACAGCUCAUUAAUCUAACGACCGAUAUAAAUCCGGCUGCGAAAAUAAACCUUCAAGUUGUGAGUAAAUUGUUU-CUAAAUUUAAGCAAC---AAUUGCAA-- .....((((((((((......((....))(((.........)))...................)))))))))).(((((((.-((.......)).)))---))))....-- ( -18.20) >DroAna_CAF1 2558 98 + 1 UACAAAUUCACAGCUCAUUAAUCUAACGACCGAUAUAAAUCCGGCUGCGAAAAGUAUCCUCCAAGUUGUGAGUAAAUUGUAU-CUAAAUCCAUAC--GAA-------A--- .....((((((((((.(((..((....))..)))........((.(((.....))).))....))))))))))...((((((-........))))--)).-------.--- ( -18.60) >DroPer_CAF1 2745 108 + 1 UACAAAUUCACAGCUCAUUAAUCUAACGACCGAUAUAAAUCCGGCUGCGAAAAUAAACCUUCAAGUUGUGAGUAAAUUGUUU-CUAAAUCAAAUC--CAACAACUGCAAAA .((((((((((((((......((....))(((.........)))...................))))))))))...))))..-............--.............. ( -14.30) >consensus UACAAAUUCACAGCUCAUUAAUCUAACGACCGAUAUAAAUCCGGCUGCGAAAAUAAACCUUCAAGUUGUGAGUAAAUUGUAU_CUAAAUCAAAAC__CAA_______AA__ .((((((((((((((...........((.(((.........))).)).(((........))).))))))))))...))))............................... (-14.01 = -13.95 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:11 2006