Locus 2639

Sequence ID 2R_DroMel_CAF1
Location 9,327,410 – 9,327,514
Length 104
Max. P 0.734694
window4348

overview

Window 8

Location 9,327,410 – 9,327,514
Length 104
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 81.74
Mean single sequence MFE -15.33
Consensus MFE -10.31
Energy contribution -10.08
Covariance contribution -0.22
Combinations/Pair 1.09
Mean z-score -1.94
Structure conservation index 0.67
SVM decision value 0.43
SVM RNA-class probability 0.734694
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9327410 104 + 20766785
AUCCAUAUUUAACCGAUAUA-----UACUAUAACUAACUAUACUAU--GUAUAACUCGUAUAUAAA--UCUAGCUA-AUAUGGUCUAGGACCAUG-GCAUUCU-UUAGCAACCU--UU
....((((.......(((((-----((.((((......)))).)))--)))).......))))...--....((((-((((((((...)))))))-.......-))))).....--.. ( -16.25)
>DroVir_CAF1 1448 101 + 1
UUCCAUAUUUAACCGAUAUA----CUUAUAUAAAUAACUAUACC--------UACUCGUAUAUAAC--UCUAGCUA-ACAUGGUCUAGGACCAUG-AUGUUUUAUUAGCAAACUU-UU
.....((((((....(((..----..))).))))))..(((((.--------.....)))))....--....((((-((((((((...)))))))-........)))))......-.. ( -13.90)
>DroGri_CAF1 1630 103 + 1
UUCCAUAUUUAACCGAUAUA---CUUAAUAUAACUAAUUAUACC--------UACUCGUAUAUAAC--ACUAGCUA-ACAUGGUCUAGGACCAUG-CUAUUUUAUUAGCAAAUUUUUU
...............(((((---(....(((((....)))))..--------.....))))))...--....((((-((((((((...)))))))-........)))))......... ( -13.80)
>DroEre_CAF1 1562 100 + 1
AUCCAUAUUUAACCGAUAUA-----UAAUAUAACUAACUAUACUA------UAACUCGUAUAUAAA--UCUAGCUA-AUAUGGUCUAGGACCAUG-GCAUUCU-UUAGCAACCU--UU
.............(((..((-----((.((((......)))).))------))..)))........--....((((-((((((((...)))))))-.......-))))).....--.. ( -13.81)
>DroAna_CAF1 1583 106 + 1
AUCCAUAUUUAACCGAUAUAUCGUAUACUCUAACUAACUAUACUA------UAACUCGUAUAUAAA--UCUAGCUAAACAUGGUCUAGGACCAUG-GCAUUCU-UUAGCAACCU--UU
.............(((..(((.(((((...........))))).)------))..)))........--....(((((((((((((...)))))))-......)-))))).....--.. ( -16.50)
>DroPer_CAF1 1575 112 + 1
AUCCAUAUUUAACCAAAAUA---UAUCCAAUAACUAACUAUUAUAGUACUAUAACUAGUAUAUAAAACUCUAGCUAAACAUGGUCUAGGACCAUGGGCAUUCU-UUAGCAACAU--UU
....((((((.....)))))---)................(((((.(((((....)))))))))).......(((((((((((((...))))))).......)-))))).....--.. ( -17.71)
>consensus
AUCCAUAUUUAACCGAUAUA_____UAAUAUAACUAACUAUACUA______UAACUCGUAUAUAAA__UCUAGCUA_ACAUGGUCUAGGACCAUG_GCAUUCU_UUAGCAACCU__UU
........................................................................((((..(((((((...)))))))..........))))......... (-10.31 = -10.08 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:10 2006