Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,320,949 – 9,321,047 |
Length | 98 |
Max. P | 0.693297 |
Location | 9,320,949 – 9,321,047 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 70.79 |
Mean single sequence MFE | -30.43 |
Consensus MFE | -20.93 |
Energy contribution | -21.16 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.29 |
Mean z-score | -1.16 |
Structure conservation index | 0.69 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.693297 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9320949 98 - 20766785 CCACGCCUAGUACUUGUACCCGCCGGCACCACCAGCACCACCGCCGCCGCCGCCACGAGCUCCUGGCUGUGGUCCCUGCGGGUACGUGGCCUCGCCCU ....((..((..(.(((((((((.((.(((((..((......)).......((((.(....).)))).))))).)).))))))))).)..)).))... ( -36.80) >DroWil_CAF1 263926 92 - 1 UCAUUUUUAAUAUUUAUAACCACCGGCACCACC---ACCACCGC---CGCCUCCACGUUGACCGGGCACUGGUCCCUGUGGAUACUGAGCCUCUCCCU (((....................((((......---......))---))..((((((..((((((...))))))..))))))...))).......... ( -20.50) >DroAna_CAF1 195249 89 - 1 CCAAGCCUAGUACUUGUAACCACCGGCC---------CCACCGCCACCGCCGCCUCGGGCACCCGGCUGCGGUCCCUGGGGGAACUGGGCCUCGCCCU ....(((((((.((.((....)).))((---------(((.....(((((.(((..((....))))).)))))...)))))..)))))))........ ( -34.00) >consensus CCAAGCCUAGUACUUGUAACCACCGGCACCACC___ACCACCGCC_CCGCCGCCACGAGCACCCGGCUGUGGUCCCUGCGGGUACUGGGCCUCGCCCU ....((((((((((((((...((((((...............)))...((((...........))))...)))...))))))))))))))........ (-20.93 = -21.16 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:07 2006