Locus 2636

Sequence ID 2R_DroMel_CAF1
Location 9,315,515 – 9,315,613
Length 98
Max. P 0.778801
window4344

overview

Window 4

Location 9,315,515 – 9,315,613
Length 98
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 86.97
Mean single sequence MFE -25.83
Consensus MFE -20.02
Energy contribution -21.02
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.79
Structure conservation index 0.78
SVM decision value 0.55
SVM RNA-class probability 0.778801
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9315515 98 + 20766785
CAAAGAGCUGAUUGAAAUCGAAUCUGAGUUGCCAGCAAGUUGCAAGUUGCCAGUUGCUAGUUGCAAGUUGCAACAAAAGACUCAAGCGGCGAACUGAA---
...(((..((((....))))..))).(((((((.((.((((....(((((.(.((((.....)))).).)))))....))))...))))).))))...--- ( -27.00)
>DroSec_CAF1 200219 96 + 1
CAAAGAGCUGAUUGAAAUCG--UCUGAGUUGCCAGCAAGUUGCAAGUUGCCAGUUGCUUGUUGCAAGUUGCAACAAAAGACUCAAGCGGCGAACUGCA---
......((.(.(((...(((--..((((((....((((.(.((.....)).).))))(((((((.....)))))))..))))))..)))))).).)).--- ( -28.80)
>DroSim_CAF1 186471 96 + 1
CAAAGAGCUGAUUGAAAUCG--UCUGAGUUGCCAGCAAGUUGCAAGUUGCCAGUUGCUAGUUGCAAGUUGCAACAAAAGACUCAAGCGGCGAACUGCA---
......((((.((((....(--(((...(((...((((.((((((.(.((.....)).).)))))).))))..))).)))))))).))))........--- ( -28.60)
>DroYak_CAF1 184772 85 + 1
AAAAGAGCUGAUUGAAAUCG--ACUGACUUGCCAACAAGUUGCAAGC--------------UGCAAGUUGCAACAAAAGACUCAAGCGGCGAACUGCAAAC
....(((((..(((....((--(((((((((....))))))((....--------------.)).)))))...))).)).)))..((((....)))).... ( -18.90)
>consensus
CAAAGAGCUGAUUGAAAUCG__UCUGAGUUGCCAGCAAGUUGCAAGUUGCCAGUUGCUAGUUGCAAGUUGCAACAAAAGACUCAAGCGGCGAACUGCA___
......((((.((((..((.........(((....)))(((((((.((((............)))).)))))))....)).)))).))))........... (-20.02 = -21.02 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:06 2006