Locus 2635

Sequence ID 2R_DroMel_CAF1
Location 9,314,902 – 9,315,009
Length 107
Max. P 0.938755
window4343

overview

Window 3

Location 9,314,902 – 9,315,009
Length 107
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 78.58
Mean single sequence MFE -23.42
Consensus MFE -11.67
Energy contribution -12.87
Covariance contribution 1.20
Combinations/Pair 1.26
Mean z-score -2.34
Structure conservation index 0.50
SVM decision value 1.27
SVM RNA-class probability 0.938755
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9314902 107 - 20766785
GUUUCUAUGCUUAUAGUUUUGGUAUAACCAUUUGAUGUAUAACAAA---AAAUCCAAAUCGAAUGAAAAUUAUGAGCUUUUUUUAAGCCAAAAUUGUUGUGCAGAAACCA
((((((..((((((((((((((.....))(((((((..........---........))))))).)))))))))))).........(((((.....))).)))))))).. ( -24.07)
>DroSec_CAF1 199605 97 - 1
GUUUCUAUGCUUAUAGUUUUGGUAUAAGCAUUUGAUGUACAACAAAA--AAAUUUAAAUCGAGUGAAAAUUAU-----------AAGCCAAAAUUGUUGUGCGGAAACCA
((((((..((..(((((((((((((((.((((((((...........--........))))))))....))))-----------..))))))))))).))..)))))).. ( -25.81)
>DroSim_CAF1 185860 94 - 1
GUUACUAUGCUUUUAGUUUUGGUAUAAGCAUUUGAUGUACAACAAAAUAAAAUUAAAAUCGAGUGAAAAUUAU-----------AAGCCAAAUU-----UGCAGAAACCA
.......(((.......((((((((((.((((((((.....................))))))))....))))-----------..))))))..-----.)))....... ( -14.10)
>DroEre_CAF1 185019 107 - 1
GUGUCUAUGGUUAUAGUUUUGCUAUAAACAUCUGGUGUACAACAAG---AAAGGCAAGUCGAGUGAAAAUGAUGUGCUUUAUUUAAGCCAAAAUUGUUGUGCAGAAGCCG
((((.((((((.........)))))).))))((..((((((((((.---...(((((((.((((...........)))).))))..)))....))))))))))..))... ( -26.30)
>DroYak_CAF1 184153 107 - 1
GUGUCUAUGGUAAUAGUUUUGACAUAAACAUUUGAUGUACAACAAA---AAAGCCACAUCGAGUAAAAAUGGUGUGCUUUAUUUAAGCCAAAAUUGUUGUGCAGACACCA
((((((.........((((......)))).......(((((((((.---(((((.((((((........))))))))))).(((......)))))))))))))))))).. ( -26.80)
>consensus
GUUUCUAUGCUUAUAGUUUUGGUAUAAACAUUUGAUGUACAACAAA___AAAUCCAAAUCGAGUGAAAAUUAUG_GCUUU_UUUAAGCCAAAAUUGUUGUGCAGAAACCA
((((((..((..(((((((((((.....((((((((.....................)))))))).....................)))))))))))...)))))))).. (-11.67 = -12.87 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:05 2006