Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,292,171 – 9,292,282 |
Length | 111 |
Max. P | 0.725287 |
Location | 9,292,171 – 9,292,282 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 82.64 |
Mean single sequence MFE | -32.87 |
Consensus MFE | -23.70 |
Energy contribution | -25.39 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.04 |
Mean z-score | -1.97 |
Structure conservation index | 0.72 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725287 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9292171 111 + 20766785 CCAUCCCACGGUGGCCACGCAGCUGCAUCAUCAGGUCCUACUUCCAAAGCAGCAGCACCACCACCAUCAGCAGCAACACCACGGACUUGUGGCCACUGUCCUUCCCGCGGA ...(((((((((((((((...(((((.......((........))...((....)).............)))))....(....)....))))))))))).......).))) ( -32.71) >DroSec_CAF1 177008 111 + 1 CCAUCCCACGGUGGCCACGCAGCUGCAUCACCAGGUCCUACUCCCAAAGCCGCAGCACCACCACCAUCAGCAGCAACACCACGGACUUGUGGCCACUGUCCUUCCGGCGGA .....(((((((((((((...(((((.......((........))...((....)).............)))))....(....)....)))))))))))((....)).)). ( -33.40) >DroSim_CAF1 163148 111 + 1 CCAUCCCACGGUGGCCACGCAGCUGCAUCACCAGGUCCUACUCCCAAAGCCGCAGCACCACCACCAUCAGCAGCAACACCACGGACUUGUGGCCACUGUCCUUCCGGCGGA .....(((((((((((((...(((((.......((........))...((....)).............)))))....(....)....)))))))))))((....)).)). ( -33.40) >DroEre_CAF1 163166 105 + 1 UCAUCCCACGGUGGCCACGCAGCAGCAUCACCAGCUCCUGCUCCCAAAGCCGCACCACCACC------ACCAGCAGCACCACGGACUUGUGGCCACUGUCCUUCCGGCGGA .....(((((((((((((((((.(((.......))).))))(((....((.((.........------....)).)).....)))...)))))))))))((....)).)). ( -36.12) >DroYak_CAF1 161603 105 + 1 UCAUCCCACGGUGGCCACGCAGCUGCAUAACCAGGUCCUUCUCCCAAAGCCGCACCACCACC------AGCAGCAACACCACGGACUUGUGGCCACUGUCCUUCCGGCGGA .....(((((((((((((((....))......((((((..........((.((.........------.)).))........)))))))))))))))))((....)).)). ( -32.97) >DroAna_CAF1 168525 93 + 1 CCAUCCCACGGUGGCCACGC---UGCAU---------------CCACAUCCGCAUCAGCACCACCUGCACGAGCCCAGCCACAAUCUGGUGGCCACCGUCCUGCCGGCCGA .......(((((((((((((---(((..---------------........))....(((.....)))...))).(((.......))))))))))))))............ ( -28.60) >consensus CCAUCCCACGGUGGCCACGCAGCUGCAUCACCAGGUCCUACUCCCAAAGCCGCAGCACCACCACCAUCAGCAGCAACACCACGGACUUGUGGCCACUGUCCUUCCGGCGGA .......(((((((((((((....))......((((((..........((.((................)).))........)))))))))))))))))............ (-23.70 = -25.39 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:00 2006