Locus 263

Sequence ID 2R_DroMel_CAF1
Location 1,657,496 – 1,657,613
Length 117
Max. P 0.807757
window560

overview

Window 0

Location 1,657,496 – 1,657,613
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.98
Mean single sequence MFE -28.81
Consensus MFE -19.00
Energy contribution -19.20
Covariance contribution 0.20
Combinations/Pair 1.12
Mean z-score -1.80
Structure conservation index 0.66
SVM decision value 0.64
SVM RNA-class probability 0.807757
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1657496 117 - 20766785
AUGUAUGUAUUUAUAUAUGUGUGUAAGUCGAGAACGUGCCUUUCACCUUUCACGUGAA-AACGUGGCCAAAUCCAAGGUCAUGGGCGCUGCAGACAAGGCAAAUAAGAG--GCCAAAACC
.((((((....))))))(((.((((.((.....))(((((((((((.......)))))-).(((((((........)))))))))))))))).))).(((.........--)))...... ( -33.20)
>DroPse_CAF1 73621 99 - 1
ACA------------UA-------AAACCGAGAACGUGCCUUUCACCUUUCACGUGAAAAACGUGGCCGGCUUCAAGGUCAC--GCACUGCAGACAUGCCAAAUAAAAGCUGCCACCACC
...------------..-------...........((((.((((((.......))))))...((((((........))))))--)))).((((.(.............)))))....... ( -22.52)
>DroSec_CAF1 43353 105 - 1
AUG------------UAUGUAUGUAAGUGGAGAACGUGCCUUUCACCUUUCACGUGAA-AACGUGGCCAAAUUCAAGGUCAUGGGCGCUGCAGACACGGCAAAUAAAAG--GCCAAAACC
...------------..(((.((((.((.....))(((((((((((.......)))))-).(((((((........)))))))))))))))).))).(((.........--)))...... ( -30.40)
>DroSim_CAF1 40224 115 - 1
AUGUUUGUAUGU--GUAUGUAUGUAAGUCGAGAACGUGCCUUUCACCUUUCACGUGAA-AACGUGGCCAAAUUCAAGGUCAUGGGCGCUGCAGACAAGGCAAAUAAGAG--GCCAAAACC
.((((((((.((--((..((((((.........)))))).((((((.......)))))-).(((((((........))))))).)))))))))))).(((.........--)))...... ( -33.50)
>DroEre_CAF1 47664 97 - 1
AU--------------------GUAAGUCGAGAACGUGCCUUUCACCUUUCACGUGAA-AACGUGGCCAGAUUCAAGGUCACGGGCGCUGCAGACAAGCCAAAUAAAAG--GCCAAAACC
..--------------------....(((..(...(((((((((((.......)))))-).(((((((........))))))))))))..).)))..(((........)--))....... ( -30.70)
>DroPer_CAF1 67623 99 - 1
ACA------------UA-------AAACCGAGAACGUGCCUUUCACCUUUCACGUGAAAAACGUGGCCGGCUUCAAGGUCAC--GCACUGCAGACAUGCCAAAUAAAAGCUGCCACCACC
...------------..-------...........((((.((((((.......))))))...((((((........))))))--)))).((((.(.............)))))....... ( -22.52)
>consensus
AUG____________UA_____GUAAGUCGAGAACGUGCCUUUCACCUUUCACGUGAA_AACGUGGCCAAAUUCAAGGUCACGGGCGCUGCAGACAAGCCAAAUAAAAG__GCCAAAACC
...................................(((((.(((((.......)))))...(((((((........))))))))))))................................ (-19.00 = -19.20 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:57 2006