Locus 2625

Sequence ID 2R_DroMel_CAF1
Location 9,274,291 – 9,274,393
Length 102
Max. P 0.961241
window4331

overview

Window 1

Location 9,274,291 – 9,274,393
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 90.52
Mean single sequence MFE -45.47
Consensus MFE -38.35
Energy contribution -37.93
Covariance contribution -0.41
Combinations/Pair 1.20
Mean z-score -2.70
Structure conservation index 0.84
SVM decision value 1.52
SVM RNA-class probability 0.961241
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9274291 102 + 20766785
CCAAAGCGGUCAAGUUGAGCAAGCCGGUGGCGGCCAUCAAGCAACCAGUGAAACCCGUGAGGGGAGAGGCGCCCAAGGUCGCCACCUUCAGUUUGGCUGACA
........((((.((..(((.....((((((((((..................(((....)))....((...))..))))))))))....)))..)))))). ( -41.10)
>DroSec_CAF1 159522 102 + 1
CCAAAGCGGUCAAGUUGAGCAAGCCGGUGGCGGCCAUCAAGCAACUGGUGAAACCGGUGAGGGGAGAGGCGCCCAAGGUCGCCACCUUCAGUUUGGCUGACA
........((((.((..(((.....((((((((((........(((((.....)))))..(((........)))..))))))))))....)))..)))))). ( -43.70)
>DroSim_CAF1 145500 102 + 1
CCAAAGCGGUCAAGUUGAGCAAGCCGGUGGCGGCCAUCAAGCAACCGGUGAAACCCGUGAGGGGAGAGGCGCCCAAGGUCGCCACCUUCAGUUUGGCUGACA
........((((.((..(((.....((((((((((.....(....)((((...(((....)))......))))...))))))))))....)))..)))))). ( -43.40)
>DroEre_CAF1 145894 102 + 1
CCAAAGCGGUCAAGCUGAGCAAACCGGUGGCGGCCAUCAAGCAGCCGGUGAAGCCCGUGAGGGGAGAGGCGCCCAAGGUCGCCACCUUCAGCUUGGCUGAUA
......(((((((((((((......((((((((((.....((.(((.......(((....)))....)))))....)))))))))))))))))))))))... ( -52.60)
>DroYak_CAF1 143712 102 + 1
CCAAAGCGGUCAAGUUGAGCAAGCCGGUGGCGGCCAUCAAGCAGCCGGUGAAACCCGUGAGGGGGGAGGCGCCUAAGGUCGCCACCUUCAGCUUGGCUGACA
.....((((((((((((((......((((((((((.....((.(((.......(((....)))....)))))....))))))))))))))))))))))).). ( -51.50)
>DroAna_CAF1 151279 102 + 1
CGAAAGCCGUAAAGCUGAGCAAGCCCGUGGCUGCCCUGAAGCAGCCCGUGAAACCCGUUCGCGGAGAGGUGCCCAAAGUGGCCACUUUCAGCUUGGCGGACA
.....(((((.((((((((....)..(((((..(..((..(((.((((((((.....)))))))...).))).))..)..)))))..))))))).)))).). ( -40.50)
>consensus
CCAAAGCGGUCAAGUUGAGCAAGCCGGUGGCGGCCAUCAAGCAACCGGUGAAACCCGUGAGGGGAGAGGCGCCCAAGGUCGCCACCUUCAGCUUGGCUGACA
......(((((((((((((......((((((((((........((.((.....)).))..(((........)))..)))))))))))))))))))))))... (-38.35 = -37.93 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:53 2006