Locus 2623

Sequence ID 2R_DroMel_CAF1
Location 9,265,213 – 9,265,304
Length 91
Max. P 0.546534
window4328

overview

Window 8

Location 9,265,213 – 9,265,304
Length 91
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 94.65
Mean single sequence MFE -12.96
Consensus MFE -11.90
Energy contribution -12.06
Covariance contribution 0.16
Combinations/Pair 1.10
Mean z-score -1.10
Structure conservation index 0.92
SVM decision value 0.03
SVM RNA-class probability 0.546534
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9265213 91 - 20766785
------CCACCACCCAGUUAAAGUAAUUUACGUUUUGUUGCAUUUCUCUGCUUUUAAAUUUUAUUCCAUGUUCAUUUUCAUUUCUGUGUGGUGUGUC
------.((((((.(((.......(((..((((((((..(((......)))...)))).........))))..))).......))).)))))).... ( -15.24)
>DroSec_CAF1 150426 91 - 1
------CCACCGCCCAGUUAAAGUAAUUUACGUUUUGUUGCAUUUCUCUGCUUUUAAAUUUUAUUCCAUGUUCAUUUUCAUUUCUGUGUGUUGUGUC
------.((((((.(((.......(((..((((((((..(((......)))...)))).........))))..))).......))).)))..))).. (  -8.74)
>DroSim_CAF1 135892 91 - 1
------CCACCACCCAGUUAAAGUAAUUUACUUUUUGUUGCAUUUCUCUGCUUUUAAAUUUUAUUCCAUGUUCAUUUUCAUUUCUGUGUGUUGUGUC
------.((((((.(((..((((((...)))))).....(((......)))................................))).)))..))).. (  -9.10)
>DroEre_CAF1 135387 91 - 1
------CCAUCACCCAGUUAAAGUAAUUUACGUUUUGUUGCAUUUCUCUGCUUUUAAAUUUUAUUCCAUGUUCAUUUUCAUUUCUGUGUGGUGUGUC
------.((((((.(((.......(((..((((((((..(((......)))...)))).........))))..))).......))).)))))).... ( -12.64)
>DroYak_CAF1 134540 97 - 1
UCAGCAUCACCACCCAGUUAAAGAAAUUUACGUUUUGUUGCAUUUCUCUGCUUUUAAAUUUUAUUCCAUGUUCAUUUUCAUUUCUGUGUGGUGUGUC
...(((.((((((.(((.....(((((..((((((((..(((......)))...)))).........))))..))))).....))).))))))))). ( -19.10)
>consensus
______CCACCACCCAGUUAAAGUAAUUUACGUUUUGUUGCAUUUCUCUGCUUUUAAAUUUUAUUCCAUGUUCAUUUUCAUUUCUGUGUGGUGUGUC
.......((((((.(((.((((....))))...((((..(((......)))...)))).........................))).)))))).... (-11.90 = -12.06 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:50 2006