Locus 2622

Sequence ID 2R_DroMel_CAF1
Location 9,255,047 – 9,255,151
Length 104
Max. P 0.536752
window4327

overview

Window 7

Location 9,255,047 – 9,255,151
Length 104
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 89.74
Mean single sequence MFE -21.31
Consensus MFE -15.32
Energy contribution -15.24
Covariance contribution -0.08
Combinations/Pair 1.11
Mean z-score -1.74
Structure conservation index 0.72
SVM decision value 0.01
SVM RNA-class probability 0.536752
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9255047 104 - 20766785
CUAUUUGCACAACUUUUUUCAGCUCAUUUCCGCUGCAGCUGGAGACAGACCGAAAACUCCACAAAAGUUACACAUCAGUGCUGCCAACUAACAAUUACAAAA--AG
......((((..((.(((((((((((.......)).))))))))).))......((((.......))))........)))).....................--.. ( -17.70)
>DroSec_CAF1 140571 104 - 1
CUAUUUGCACAACUUUUUUCAGCUCAUUUCCGCUGCAGCUGGAGACAGCACGAAAACCCCACAAAAGUUACACAUCAGUGCUGGCAACUACCAAUUACAAAA--AG
....((((.......(((((((((((.......)).)))))))))((((((.........((....)).........))))))))))...............--.. ( -22.47)
>DroSim_CAF1 125554 104 - 1
CUAUUUGCACAACUUUUUUCAGCUCAUUUCCGCUGCAGCUGGAGACAGCACGAAAACCCCACAAAAGUUACACAUCAGUGCUGGCAACUACCAAUUACAAAA--AG
....((((.......(((((((((((.......)).)))))))))((((((.........((....)).........))))))))))...............--.. ( -22.47)
>DroEre_CAF1 125354 100 - 1
CUAUUUGCACAACUUU-UUCAGCUCAUUUCCGCUGCAGCUGGAGACAGACCGAAAAC----CAGAAGCUGCACAUCAGUGCUGUCAACUACCAA-UUUAAAACCAG
......((((......-...(((........)))(((((((....)....(......----..).))))))......)))).............-........... ( -18.20)
>DroYak_CAF1 124299 105 - 1
CUAUUUGCACAACUUU-UGCAGCUCAUUUCCGCUGCAGCUGCAGGCAGACCGAAAACCCCACAGAAGUUGCACAUCAGUGCUGUCAACUACCAAAUGCAAAACAAG
...((((((.((((((-((((((........)))))..(((....)))..............)))))))((((....))))..............))))))..... ( -25.70)
>consensus
CUAUUUGCACAACUUUUUUCAGCUCAUUUCCGCUGCAGCUGGAGACAGACCGAAAACCCCACAAAAGUUACACAUCAGUGCUGGCAACUACCAAUUACAAAA__AG
......((((..((.(((((((((((.......)).))))))))).))..................(.....)....))))......................... (-15.32 = -15.24 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:49 2006