Locus 262

Sequence ID 2R_DroMel_CAF1
Location 1,654,658 – 1,654,761
Length 103
Max. P 0.987309
window559

overview

Window 9

Location 1,654,658 – 1,654,761
Length 103
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.65
Mean single sequence MFE -36.78
Consensus MFE -22.51
Energy contribution -24.55
Covariance contribution 2.04
Combinations/Pair 1.04
Mean z-score -2.54
Structure conservation index 0.61
SVM decision value 2.07
SVM RNA-class probability 0.987309
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1654658 103 - 20766785
GCAUAAAUAGGCCAAAUGCCAUUAGCACAGGAG--------CCU-----CGUGCGACGU--UGUCGAUUCCAGAGUGGCGGGUUCUUGUUUGCUUUCGGCGUUUGGUUUUGGUUUUUU--
........((((((((((((...((((((((((--------(((-----...((.((.(--((.......))).)).))))))))))))..)))...)))))))))))).........-- ( -37.80)
>DroSec_CAF1 40563 113 - 1
GCAUAAAUAGGCCAAAUGCCAUUAGCACAGGAGCACAAAUGCCU-----CGUGCGACGU--UGUCGAUUCCAGAGUGGCGGGUUCUUGUUUGCUUUCGGCGUUUGGUUUUUGUUUUUUGC
(((.((((((((((((((((...(((((((((((.....(((((-----(...((((..--.))))......))..)))).))))))))..)))...))))))))))..))))))..))) ( -40.00)
>DroSim_CAF1 37470 105 - 1
UCAUAAAUAGGCCAAAUGCCAUUAGCACAGGAG--------CCU-----CUUGCGACGU--UGUCGAUUCCAAAGUGGCGGGUUCUUGUUUGCUUUCGGCGUUUGGUUUUUGUUUUUUGC
........((((((((((((...((((((((((--------(((-----...((.((.(--((.......))).)).))))))))))))..)))...))))))))))))........... ( -38.10)
>DroEre_CAF1 44846 94 - 1
GCGUAAAUAGGCCAAAUGCCAUUAGCACAGGAG--------CCU-----CGUGCGACGC--AGUCGAUUCCAGAGUGGCGGGUUCUUGUUUGCUCUCGGCGUUUGGUUU-----------
........((((((((((((...((((((((((--------((.-----(((.((((..--.))))(((....))).))))))))))))..)))...))))))))))))----------- ( -36.50)
>DroPer_CAF1 64169 93 - 1
GCAUAAAUAGGCCAAAUGCCAUUAGCACAAGAG--------CCUGCCUCCGUGCGACGCUCUGUCGAUGGUGGAGUGGCGGGUUCAGUUCUGUUCU---------GUUU------U----
....((((((..((..(((.....)))...(((--------((((((.((((.((((.....))))))))......))))))))).....))..))---------))))------.---- ( -31.50)
>consensus
GCAUAAAUAGGCCAAAUGCCAUUAGCACAGGAG________CCU_____CGUGCGACGU__UGUCGAUUCCAGAGUGGCGGGUUCUUGUUUGCUUUCGGCGUUUGGUUUU_GUUUUUU__
........((((((((((((...((((((((((........((..........((((.....))))..........))....))))))..))))...))))))))))))........... (-22.51 = -24.55 +   2.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:56 2006