Locus 2619

Sequence ID 2R_DroMel_CAF1
Location 9,235,572 – 9,235,663
Length 91
Max. P 0.641488
window4323

overview

Window 3

Location 9,235,572 – 9,235,663
Length 91
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 84.23
Mean single sequence MFE -19.88
Consensus MFE -12.46
Energy contribution -11.93
Covariance contribution -0.52
Combinations/Pair 1.33
Mean z-score -3.04
Structure conservation index 0.63
SVM decision value 0.22
SVM RNA-class probability 0.641488
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9235572 91 - 20766785
AUAUUUACCAGCAUUAACAUGCGCUGAGCGCAUAAAGUGCUCUUUACCUCAAACCCUGGGCAAAU---AACA--AGGACCAAAAUCCCAACCCGCA-
.(((((.(((((((....))))...((((((.....))))))..............)))..))))---)...--.(((......))).........- ( -17.90)
>DroSec_CAF1 128787 91 - 1
AUAUUUACCAGCAUUAACAUGCGCUGAGCGCAUAAAGUGCUCUUUACCUCAAACCCUCGGCAAAU---AACA--AGGACCAAAAUCCCAACCCGCA-
.(((((.((.((((....))))...((((((.....))))))................)).))))---)...--.(((......))).........- ( -17.70)
>DroSim_CAF1 113541 91 - 1
AUAUUUACCAGCAUUAACAUGCGCUGAGCGCAUAAAGUGCUCUUUACCUCAAACCCUCGGCAAAU---AACA--CGGACCAAAAUCCCAACCCGCA-
.(((((.((.((((....))))...((((((.....))))))................)).))))---)...--.(((......))).........- ( -17.80)
>DroEre_CAF1 114084 91 - 1
AUAUUUACCAGCAUUAACAUGCGCUGGGCGCAUAAAGUGCUCUCCACCCCAAACCCUUGGCAAAU---AACA--AGGACCAAAAUCCCAGCCCGCA-
..........((((....))))((.((((((((...))))..............(((((......---..))--)))............)))))).- ( -23.10)
>DroYak_CAF1 112172 91 - 1
AUAUUUACCAGCAUUAACAUGCGCUGAGCGCAUAAAGUGCUCUGCACCUCAAACCCUCGGCAAAU---AAAA--AGGACCAAAAUCCCAACCCGCA-
.(((((.((.((((....))))((.((((((.....)))))).)).............)).))))---)...--.(((......))).........- ( -21.50)
>DroMoj_CAF1 193632 87 - 1
AUAUUUACAAGCAUUAACACGCGUUCAGCGCGUAAAAUGUGC-----CUCAAACU---GACAACUCGCAGCUCAA--ACACAAAUCUUGAGCCGCAA
..........((((....(((((.....))))).....))))-----........---........((.((((((--.........)))))).)).. ( -21.30)
>consensus
AUAUUUACCAGCAUUAACAUGCGCUGAGCGCAUAAAGUGCUCUUUACCUCAAACCCUCGGCAAAU___AACA__AGGACCAAAAUCCCAACCCGCA_
.........((((((...((((((...))))))..))))))........................................................ (-12.46 = -11.93 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:46 2006