Locus 2617

Sequence ID	2R_DroMel_CAF1
Location	9,226,348 – 9,226,448
Length	100
Max. P	0.620887

overview

Window 0

Location	9,226,348 – 9,226,448
Length	100
Sequences	6
Columns	117
Reading direction	forward
Mean pairwise identity	71.81
Mean single sequence MFE	-28.73
Consensus MFE	-15.04
Energy contribution	-15.57
Covariance contribution	0.53
Combinations/Pair	1.17
Mean z-score	-1.54
Structure conservation index	0.52
SVM decision value	0.18
SVM RNA-class probability	0.620887
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9226348 100 + 20766785
AGCUUGCAACAUGAGCGACUUUUGUUGUACUUUCUAGAGCGUUGCA--CAAUGCAUUAGA--G-UCCCCGAGCGGGAAUAACAGCUAAAGGAGUUCAUCCC----------AUC--C
..........((((((..((((.(((((...((((((.(((((...--.))))).)))))--)-((((.....))))...))))).))))..))))))...----------...--. ( -30.10)
>DroVir_CAF1 163305 90 + 1
AGCUUGCAACAUGAGCGACUUUUGUUGUACUUUCUAGAGCGCUGCA--CAAUGCAUUCGA--G-UCCCCAUGCAGCCAU-GCAGCUAG---------CCUC----------AGC--U
(((((((((((.(((...))).))))))).......((((((((((--...(((((..(.--.-..)..)))))....)-)))))..)---------.)))----------)))--) ( -25.10)
>DroPse_CAF1 87104 80 + 1
AGCUUGCAACAUGAGCGACUUUUGUUGUACUUUCUGGAGCGUUGCA--CAAUGCAUUAGAGAG-UCCCCGGGAGCG----CCAGGCA------------------------------
.(((((........(((.((((((..(.(((((((((.(((((...--.))))).))))))))-))..))))))))----)))))).------------------------------ ( -27.30)
>DroWil_CAF1 140962 94 + 1
AGCUUGCAACAUGAGCGACUUUUGUUGUACUUUCUAGAGCGUUGCACACAAUGCAUUAGA--G-UCCCAGAGCAGGC----------GAGGAGUUUAUCCC----------AGUUCC
.((((((.......(((((....)))))...((((((.((((((....)))))).)))))--)-.......))))))----------(.(((.....))))----------...... ( -28.70)
>DroMoj_CAF1 180859 91 + 1
AGCUUGCAACAUGAGCGACUUUUGUUGUACUUUCUGGAGCGCUGCA--CAAUCCAUUGGA--GGUCCCUAUGCAGUCAU-GCAGCUAG---------CCUU----------AGC--U
(((((((((((.(((...))).)))))))......((...((((((--..((.(((.((.--....)).)))..))..)-)))))...---------))..----------)))--) ( -23.60)
>DroAna_CAF1 108246 110 + 1
AGCUUGCAACAUGAGCGACUUUUGUUGUACUUUCUAGAGCGUUGCA--CAAUGCAUUAGA--G-UCCCAGAGCGGGAACAGCGACUAAAGGAGUUCAUCCCGAGCUGUAGGAUU--C
((((((....((((((..((((.(((((...((((((.(((((...--.))))).)))))--)-((((.....))))...))))).))))..))))))..))))))........--. ( -37.60)
>consensus
AGCUUGCAACAUGAGCGACUUUUGUUGUACUUUCUAGAGCGUUGCA__CAAUGCAUUAGA__G_UCCCCGAGCAGGCAU_GCAGCUAG_________UCCC__________AGC__C
.((((((((((.(((...))).))))))....(((((.((((((....)))))).))))).........))))............................................ (-15.04 = -15.57 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:43 2006