Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,212,731 – 9,212,823 |
Length | 92 |
Max. P | 0.715951 |
Location | 9,212,731 – 9,212,823 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 85.33 |
Mean single sequence MFE | -28.36 |
Consensus MFE | -21.92 |
Energy contribution | -22.40 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.11 |
Mean z-score | -1.73 |
Structure conservation index | 0.77 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.715951 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9212731 92 + 20766785 AUG-------AUAACUUUCUUAGUUAUAAGUUGGUUUUUCCUGCGAGUGUCCCUAUGACUCACAGUUUAGCAUGACAUUUGCAGGCUGACAGGAA--------GUGC ...-------((((((.....))))))..((..(.....((((((((((((.(((.(((.....))))))...)))))))))))))..)).....--------.... ( -26.40) >DroSec_CAF1 106362 92 + 1 ACG-------AUAACUUUCUUAGUUAUAAGUUGGUUUUUCCUGCGAGUGUCCCUGCGACUCACAGUUUAGCAUGACAUUUGCAGGCUGACAGGAA--------GUGC ...-------((((((.....))))))..((..(.....((((((((((((..((((((.....)))..))).)))))))))))))..)).....--------.... ( -28.10) >DroSim_CAF1 89419 92 + 1 ACG-------AUAACUUUCUUAGUUAUAAGUUGGUUUUUCCUGCGAGUGUGCCUGCGACUCACAGUUUAGCAUGACAUUUGCAGGCUGACAGGAA--------GUGC ...-------((((((.....))))))..((..(.....(((((((((((.(.((((((.....)))..))).)))))))))))))..)).....--------.... ( -26.20) >DroEre_CAF1 92224 107 + 1 GUCGCAAAAAGUAACUUUCUCAGUUAUAAGUUGGUUUUUCCGGCGAGUGUCCCUCCGACUAACAGUUUAGCAUGACAUUUGCAGGCUGACAGGAAGUGCGGAAGUGC ((((((((((.((((((..........)))))).)))))...(((((((((.....(((.....)))......)))))))))..)).))).....(..(....)..) ( -27.70) >DroYak_CAF1 88671 97 + 1 ACUGUGC--UGAAACCUUCUUAGUUAUAAGUUGGUUUUUCCUGCGAGUGUCCUUGCGACUAACAGUUUAGCACGACAUUUGCAGGCUGACAGGAU--------GUGC .((((..--.((((((..((((....))))..)))))).((((((((((((..((((((.....)))..))).))))))))))))...))))...--------.... ( -33.40) >consensus ACG_______AUAACUUUCUUAGUUAUAAGUUGGUUUUUCCUGCGAGUGUCCCUGCGACUCACAGUUUAGCAUGACAUUUGCAGGCUGACAGGAA________GUGC ..........((((((.....))))))..((..(.....((((((((((((.(((.(((.....))))))...)))))))))))))..))................. (-21.92 = -22.40 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:33 2006