Locus 2613

Sequence ID 2R_DroMel_CAF1
Location 9,212,147 – 9,212,260
Length 113
Max. P 0.869390
window4307 window4308

overview

Window 7

Location 9,212,147 – 9,212,240
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 92.75
Mean single sequence MFE -29.12
Consensus MFE -25.73
Energy contribution -26.28
Covariance contribution 0.56
Combinations/Pair 1.10
Mean z-score -1.64
Structure conservation index 0.88
SVM decision value 0.86
SVM RNA-class probability 0.869390
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9212147 93 + 20766785
CUUUGCGAAAGCGAAAUAUCAAGCAUUCGCCAUGUGGUCCAACUCUUUGCACUUCCGCCCGCAGGGGCCACUUGGCCAGAGAGAAACUUUUUU
.(((((....))))).............((((.(((((((........((......))......))))))).)))).((((((...)))))). ( -27.54)
>DroSec_CAF1 105784 93 + 1
CUUUGCGAAAGCGAAAUAUCAAGCAUUCGCCAUGUGGUCCGACUCUUGGCACUUCCGCCCGCAGGGGCCACUUGGCCAGAGAGAAACUUUUUU
.(((((....))))).............((((.(((((((..((...(((......)))...))))))))).)))).((((((...)))))). ( -30.20)
>DroSim_CAF1 88863 93 + 1
CUUUGCGAAAGCGAAAUAUCAAGCAUUCGCCAUGUGGUCCGACUCUUGGCACUUCCGCCCGCAGGGGCCACUUGGCCAGAGAGAAACUUUUUU
.(((((....))))).............((((.(((((((..((...(((......)))...))))))))).)))).((((((...)))))). ( -30.20)
>DroEre_CAF1 91734 92 + 1
CUUUGCGAAAGCGAAAUAUCAAGCAUUCGCCAUGUGGUCCGACUCUUGGCACUUCCGCCCGCAGGGGCCACUUGGCCAGAGAGAAACUUUU-U
.(((((....))))).............((((.(((((((..((...(((......)))...))))))))).))))...............-. ( -30.10)
>DroYak_CAF1 88110 92 + 1
CUUUGCGAAAGCGAAAUAUCAAGCAUUCGCCAUGUGGUCCGACUCUUGGCACUUCCGCCCGCAGGGGCCACUUGGCCAGAGAGAAACUUUU-U
.(((((....))))).............((((.(((((((..((...(((......)))...))))))))).))))...............-. ( -30.10)
>DroAna_CAF1 95057 86 + 1
CUUUGC------GCAAUAUCAAGCAUUCGCCAUGUGGUCCAACUCU-GGCACUUCCGUCCCCGGAGGCCACUUGGCCGGCAAGAAAGUUUUUU
.(((((------((........))....((((.(((((....((((-((.((....))..))))))))))).))))..))))).......... ( -26.60)
>consensus
CUUUGCGAAAGCGAAAUAUCAAGCAUUCGCCAUGUGGUCCGACUCUUGGCACUUCCGCCCGCAGGGGCCACUUGGCCAGAGAGAAACUUUUUU
.(((((....))))).............((((.(((((((..((...(((......)))...))))))))).))))................. (-25.73 = -26.28 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 9,212,167 – 9,212,260
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 92.47
Mean single sequence MFE -25.56
Consensus MFE -21.52
Energy contribution -22.28
Covariance contribution 0.75
Combinations/Pair 1.12
Mean z-score -1.59
Structure conservation index 0.84
SVM decision value -0.03
SVM RNA-class probability 0.517881
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9212167 93 + 20766785
AAGCAUUCGCCAUGUGGUCCAACUCUUUGCACUUCCGCCCGCAGGGGCCACUUGGCCAGAGAGAAACUUUUUUAUUCAAUUUGAUUUUCUUCA
........((((.(((((((........((......))......))))))).))))..(((((((.(...............).))))))).. ( -22.90)
>DroSec_CAF1 105804 93 + 1
AAGCAUUCGCCAUGUGGUCCGACUCUUGGCACUUCCGCCCGCAGGGGCCACUUGGCCAGAGAGAAACUUUUUUAUUCAAUUUGAUUUUCUUCA
........((((.(((((((..((...(((......)))...))))))))).))))..(((((((.(...............).))))))).. ( -25.56)
>DroSim_CAF1 88883 92 + 1
AAGCAUUCGCCAUGUGGUCCGACUCUUGGCACUUCCGCCCGCAGGGGCCACUUGGCCAGAGAGAAACUUUUUU-UUUAAUUGGAUUUUCUUCA
........((((.(((((((..((...(((......)))...))))))))).))))..(((((((.((..((.-...))..)).))))))).. ( -27.90)
>DroEre_CAF1 91754 92 + 1
AAGCAUUCGCCAUGUGGUCCGACUCUUGGCACUUCCGCCCGCAGGGGCCACUUGGCCAGAGAGAAACUUUU-UAUUCAAUUUGAUAUUCUUGA
........((((.(((((((..((...(((......)))...))))))))).))))((((..(((......-..)))..)))).......... ( -25.70)
>DroYak_CAF1 88130 92 + 1
AAGCAUUCGCCAUGUGGUCCGACUCUUGGCACUUCCGCCCGCAGGGGCCACUUGGCCAGAGAGAAACUUUU-UAUUCAAUUUGAUUUUCUUCA
........((((.(((((((..((...(((......)))...))))))))).))))((((..(((......-..)))..)))).......... ( -25.70)
>DroAna_CAF1 95071 92 + 1
AAGCAUUCGCCAUGUGGUCCAACUCU-GGCACUUCCGUCCCCGGAGGCCACUUGGCCGGCAAGAAAGUUUUUUAUUCAAUUUGAUUUGCUCAA
........((((.(((((....((((-((.((....))..))))))))))).)))).((((((.(((((........)))))..))))))... ( -25.60)
>consensus
AAGCAUUCGCCAUGUGGUCCGACUCUUGGCACUUCCGCCCGCAGGGGCCACUUGGCCAGAGAGAAACUUUUUUAUUCAAUUUGAUUUUCUUCA
........((((.(((((((..((...(((......)))...))))))))).))))..(((((((.(...............).))))))).. (-21.52 = -22.28 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:32 2006