| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,192,111 – 9,192,202 |
| Length | 91 |
| Max. P | 0.592605 |
| Location | 9,192,111 – 9,192,202 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 83.27 |
| Mean single sequence MFE | -20.67 |
| Consensus MFE | -16.18 |
| Energy contribution | -16.32 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.592605 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9192111 91 - 20766785 AGCCCAGCACAUGUGU-UUGCAAUUUUUCUAUGAAUAUGAAAUAAGUCCCUCCUUCGCAUGUGCGUAAAUAAACAAACGAAGGAG----CGGCAAA .((..((((....)))-).))....((((.........))))...(((.((((((((..(((..........)))..))))))))----.)))... ( -21.80) >DroPse_CAF1 59248 90 - 1 GAGCAAGCACAUGUGUUUUGCGAUUUUUCUAUGAAUAUGAAAUAAGUUUUCGCCUCGCAUGUGCGUAAAUAAACAAGCA--GCAG----AAGCAAA ..((..(((((((((....((((..((((.........)))).......))))..)))))))))((......))..)).--((..----..))... ( -22.70) >DroGri_CAF1 86934 90 - 1 A-C--GGCACAUGUGU-CUGCGAUUUUUCUAUGAAUAUGAAAUAAGUUUUUGCCUCGCAUGUGCGUAAAUAAACAAACAG--CAGAAAACAGCACA .-.--.(((((((((.-..((((..((((.........)))).......))))..)))))))))...............(--(........))... ( -19.20) >DroMoj_CAF1 119211 92 - 1 G-CCCAGCACAUGUGU-CUGCGAUUUUUCUAUGAAUAUGAAAUAAGUUUUUGCCUCGCAUGUGCGUAAAUAAACAAACAG--CAGAAAGCAGCGCA (-(.(.(((((((((.-..((((..((((.........)))).......))))..)))))))))...............(--(.....)).).)). ( -21.30) >DroAna_CAF1 75108 88 - 1 AGCCAAGCACAUGUGU-UUGCGAUUUUUCUAUGAAUAUGAAAUAAGUCCUUCCUUCGCAUGUGCGUAAAUAAACAAACGGA---G----AAGCAAA ..((..(((((((((.-..(.((((((((.........)))..))))))......)))))))))((......))....)).---.----....... ( -17.50) >DroPer_CAF1 58611 90 - 1 GAGCAAGCACAUGUGUUUUGCGAUUUUUCUAUGAAUAUGAAAUAAGUUUUCGCCUCGCAUGUGCGUAAAUAAACAAACA--GCAG----AAGCAGA ..((..(((((((((....((((..((((.........)))).......))))..)))))))))((......)).....--))..----....... ( -21.50) >consensus A_CCAAGCACAUGUGU_UUGCGAUUUUUCUAUGAAUAUGAAAUAAGUUUUUGCCUCGCAUGUGCGUAAAUAAACAAACAG__CAG____AAGCAAA ......(((((((((....((((..((((.........)))).......))))..)))))))))................................ (-16.18 = -16.32 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:24 2006