| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,183,623 – 9,183,741 |
| Length | 118 |
| Max. P | 0.789984 |
| Location | 9,183,623 – 9,183,741 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.00 |
| Mean single sequence MFE | -28.32 |
| Consensus MFE | -24.38 |
| Energy contribution | -25.42 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.789984 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9183623 118 - 20766785 CGGAAGGGUCCUUCUAAGUGCUGCGGUUACCAAUGAAAUUUGGAUGGUUAAUAAAAAAAAGAAACUAAGGCCAAGUUUACGUGG--GGGCAGUCACUGGAGAUUUUAUUAAAAAACUAAG .(((((....))))).((((((((.....(((...((((((((.(((((.............)))))...))))))))...)))--..)))).))))....................... ( -28.72) >DroSec_CAF1 67951 114 - 1 CGGAAGAGUCCUUCUGAGUGCUGCGGUUGCCAAUGAAAUUUGGAUGGUUAAUAAAA--A--AAACUAAGGCCAAGUUUACGUGG--GGGCAGUCACUGGAGAUUUUAUUAAAAAAAUAAG ((((((....))))))((((((((...(.(((...((((((((.(((((.......--.--.)))))...))))))))...)))--.))))).))))....................... ( -29.70) >DroSim_CAF1 60293 118 - 1 CGGAAGAGUCCUUCCGAGUGCUGCGGUUGCCAAUGAAAUUUGGAUGGUUAAUAAAAAAA--AAACUAAGGCCAAGUUAACGUGGGGGGGCAGUCACUGGAGAUUUUAUUAAAAAACUAAG ((((((....))))))((((((((..((.(((....(((((((.(((((..........--.)))))...)))))))....))).)).)))).))))....................... ( -30.60) >DroEre_CAF1 64744 116 - 1 CGGAAGAGUCCUUCUGAGUGCUGCGGUUGCCAAUGAAAUUUAGAGGGUUGAUAAAAAAA--AAACUAAGGCCAAGUUUACGUGG--GGGCAGUCACGGGAGAUUUUAUUAUAAAACUAAG ((((((....))))))....(((.(..((((.(((((((((.(..((((..........--.))))....).)))))).)))..--.))))..).)))...................... ( -24.50) >DroYak_CAF1 59431 115 - 1 CGGAAGAGUCCUUCUGGGUGCUGCGAUUGCCAAUGAAUUUUGGAUGUUUGAUGAAA-AA--AAACUAAGGCCAAGUUUACGUGG--GGGCAGUCACGGGAGAUUUUAUUAAAAAACUAAG ((((((....))))))....(((.(((((((.(((((.(((((..((((.......-..--)))).....))))).)).)))..--.))))))).)))...................... ( -28.10) >consensus CGGAAGAGUCCUUCUGAGUGCUGCGGUUGCCAAUGAAAUUUGGAUGGUUAAUAAAAAAA__AAACUAAGGCCAAGUUUACGUGG__GGGCAGUCACUGGAGAUUUUAUUAAAAAACUAAG ((((((....)))))).(((((((.....(((...((((((((.(((((.............)))))...))))))))...)))....)))).)))........................ (-24.38 = -25.42 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:17 2006