Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,195,282 – 1,195,375 |
Length | 93 |
Max. P | 0.604991 |
Location | 1,195,282 – 1,195,375 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 80.43 |
Mean single sequence MFE | -33.18 |
Consensus MFE | -21.35 |
Energy contribution | -21.60 |
Covariance contribution | 0.26 |
Combinations/Pair | 1.38 |
Mean z-score | -1.48 |
Structure conservation index | 0.64 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581683 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1195282 93 + 20766785 AUAUUGGCCAUUGAGAAACAUGUUGGCCCGGUAGUCGCCACUGGCAGCGGCGAGCACUGCCAGGGUAAUGCACAGGGCGAGCUGCUCCCUGAA .....(((((.((.....))...)))))..(((...(((.(((((((.(.....).))))))))))..))).(((((.(.....).))))).. ( -35.10) >DroSec_CAF1 12354 93 + 1 AUAUUGGCCAUUUAGAAACAUGUUGGCCUGGUAGUCGCCACUGGCAGCGGCGAGCACUGCCAGGGUGAUGCACAGGGCGAGCUGCUCCCUGAA .....(((((.............)))))..(((.(((((.(((((((.(.....).))))))))))))))).(((((.(.....).))))).. ( -38.62) >DroSim_CAF1 10107 93 + 1 AUAUUGGCCAUUUAGAAACAUGUUGGCCUGGUAGUCGCCACUGGCAGCGGCGAGCACUGCCAGGGUGAUGCACAGGGCGAGCUGCUCCCUGAA .....(((((.............)))))..(((.(((((.(((((((.(.....).))))))))))))))).(((((.(.....).))))).. ( -38.62) >DroEre_CAF1 13626 93 + 1 GUACUGGCCGUUAAGAAACAUGUUGGCCUGGUAGUCACCAAUGACAGAGGCGAGCACUGCCAGGGUAAUGCAUAAGCCGAGCUGCUCCCUAAA .(((((((((.............))))).))))((((....))))..(((.(((((..((..((.(........).))..))))))))))... ( -27.12) >DroWil_CAF1 21668 93 + 1 AUAUUGGCCAUUGAGGAACAUAUUGCCCUUAUAGUUGGCAUUGGCCAGGGCCAGCAUGGCCAAUGGCAGGACUAACGCGAACUGCUUUCGACA .(((((((((((((((..........)))))..((((((.((....)).))))))))))))))))((((..(......)..))))........ ( -31.40) >DroYak_CAF1 9078 93 + 1 GUACCUCCCGUUUAGAAACAUGUUAGCCUGGUAGUCACCACUGGCAGAGGCGACCACUGCCAGGGUAAUGAAUAGGGCGAGCCGCUCCCUAAG ((..(((..(((....)))......((((....((.(((.(((((((.((...)).)))))))))).)).....)))))))..))........ ( -28.20) >consensus AUAUUGGCCAUUUAGAAACAUGUUGGCCUGGUAGUCGCCACUGGCAGCGGCGAGCACUGCCAGGGUAAUGCACAGGGCGAGCUGCUCCCUAAA .(((((((((.............))))).))))...(((.(((((((.(.....).))))))))))......(((((.(.....).))))).. (-21.35 = -21.60 + 0.26)
Location | 1,195,282 – 1,195,375 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 80.43 |
Mean single sequence MFE | -31.83 |
Consensus MFE | -20.06 |
Energy contribution | -18.87 |
Covariance contribution | -1.19 |
Combinations/Pair | 1.44 |
Mean z-score | -1.58 |
Structure conservation index | 0.63 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.604991 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1195282 93 - 20766785 UUCAGGGAGCAGCUCGCCCUGUGCAUUACCCUGGCAGUGCUCGCCGCUGCCAGUGGCGACUACCGGGCCAACAUGUUUCUCAAUGGCCAAUAU ....(((((((....((((.(((..(..(((((((((((.....))))))))).))..).))).)))).....)))))))............. ( -34.40) >DroSec_CAF1 12354 93 - 1 UUCAGGGAGCAGCUCGCCCUGUGCAUCACCCUGGCAGUGCUCGCCGCUGCCAGUGGCGACUACCAGGCCAACAUGUUUCUAAAUGGCCAAUAU ..(((((.(.....).)))))....((.(((((((((((.....))))))))).)).))......(((((.............)))))..... ( -34.02) >DroSim_CAF1 10107 93 - 1 UUCAGGGAGCAGCUCGCCCUGUGCAUCACCCUGGCAGUGCUCGCCGCUGCCAGUGGCGACUACCAGGCCAACAUGUUUCUAAAUGGCCAAUAU ..(((((.(.....).)))))....((.(((((((((((.....))))))))).)).))......(((((.............)))))..... ( -34.02) >DroEre_CAF1 13626 93 - 1 UUUAGGGAGCAGCUCGGCUUAUGCAUUACCCUGGCAGUGCUCGCCUCUGUCAUUGGUGACUACCAGGCCAACAUGUUUCUUAACGGCCAGUAC .((((((((((....(((((.....(((((.((((((.(....)..))))))..))))).....)))))....)))))))))).......... ( -27.40) >DroWil_CAF1 21668 93 - 1 UGUCGAAAGCAGUUCGCGUUAGUCCUGCCAUUGGCCAUGCUGGCCCUGGCCAAUGCCAACUAUAAGGGCAAUAUGUUCCUCAAUGGCCAAUAU ........((((..(......)..)))).(((((((((..((((....)))).((((.........))))............))))))))).. ( -30.70) >DroYak_CAF1 9078 93 - 1 CUUAGGGAGCGGCUCGCCCUAUUCAUUACCCUGGCAGUGGUCGCCUCUGCCAGUGGUGACUACCAGGCUAACAUGUUUCUAAACGGGAGGUAC ....(((((((....(((.......((((((((((((.((...)).))))))).)))))......))).....)))))))............. ( -30.42) >consensus UUCAGGGAGCAGCUCGCCCUAUGCAUUACCCUGGCAGUGCUCGCCGCUGCCAGUGGCGACUACCAGGCCAACAUGUUUCUAAAUGGCCAAUAU ....(((((((...................(((((((.........)))))))((((.........))))...)))))))............. (-20.06 = -18.87 + -1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:50 2006