Locus 2599

Sequence ID 2R_DroMel_CAF1
Location 9,173,144 – 9,173,238
Length 94
Max. P 0.568785
window4283

overview

Window 3

Location 9,173,144 – 9,173,238
Length 94
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 81.77
Mean single sequence MFE -31.32
Consensus MFE -18.11
Energy contribution -18.92
Covariance contribution 0.81
Combinations/Pair 1.16
Mean z-score -2.05
Structure conservation index 0.58
SVM decision value 0.07
SVM RNA-class probability 0.568785
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9173144 94 - 20766785
CAAA-AGUCGACGGUGGCG-GAGG---------GGCGCCACUUGGGGCACAAAAGGCGCAUUUUCCAUGAAAGAAAAGUGGCUAACUAAGUCGCCGACUUGGC-AG
....-.(((((((((((((-((((---------((((((..(((.....)))..))))).))))))..........(((.....)))..)))))))..)))))-.. ( -34.80)
>DroPse_CAF1 41706 88 - 1
--------GGGUGGUGGGGGGGGG---------GGCGCCACUUGAGGCACAAAAGCCGCAUUUUAUAUAAAAGAAAAGUGGCUAACUAAGUCACAGACUCGGC-AU
--------..(((.((((...(..---------((((((......))).....((((((.((((........)))).))))))......))).)...)))).)-)) ( -25.40)
>DroSec_CAF1 57527 94 - 1
CAAA-AGUCGGUGGUGGCG-GAGG---------GGCGCCACUUGGGGCACAAAAGGCGCAUUUUCCAUGAAAGAAAAGUGGCUAACUAAGUCGCCGACUUGGC-AG
...(-(((((((((....(-((((---------((((((..(((.....)))..))))).))))))..........(((.....)))...))))))))))...-.. ( -33.50)
>DroSim_CAF1 49865 94 - 1
CAAA-AGUCGGUGGUGGCG-GAGG---------GGCGCCACUUGGGGCACAAAAGGCGCAUUUUCCAUGAAAGAAAAGUGGCUAACUAAGUCGCCGACUUGGC-AG
...(-(((((((((....(-((((---------((((((..(((.....)))..))))).))))))..........(((.....)))...))))))))))...-.. ( -33.50)
>DroYak_CAF1 48728 104 - 1
CAAA-AGUUGGAGGCGGUG-GAGGCGGGGAGGGAACGCCACUUGGGGCACAAAAGGCGCAUUUUCCAUGAAAGAAAAGUGGCUAACUAAGUCGCCGACUUGGCAAG
...(-((((((.(((...(-..(((..((((((..((((..(((.....)))..))))..)))))).(....).......)))..)...))).)))))))...... ( -30.00)
>DroAna_CAF1 51472 84 - 1
CGAAGAGUCG------------GG---------GGCGCCACUUGAGGCACAAAAGGCGCAUUUUCUAUGAAAGAAAAGUGGCUAACUAAGUCGCCGGCUUCGA-AU
(((..(((((------------(.---------((((((......))).....((.(((.((((((.....))))))))).))......))).))))))))).-.. ( -30.70)
>consensus
CAAA_AGUCGGUGGUGGCG_GAGG_________GGCGCCACUUGGGGCACAAAAGGCGCAUUUUCCAUGAAAGAAAAGUGGCUAACUAAGUCGCCGACUUGGC_AG
.....(((((........................(((((..(((.....)))..)))))..................((((((.....)))))))))))....... (-18.11 = -18.92 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:08 2006