Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,168,227 – 9,168,333 |
Length | 106 |
Max. P | 0.999941 |
Location | 9,168,227 – 9,168,333 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 94.72 |
Mean single sequence MFE | -25.62 |
Consensus MFE | -25.08 |
Energy contribution | -25.08 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.15 |
Mean z-score | -2.40 |
Structure conservation index | 0.98 |
SVM decision value | 4.71 |
SVM RNA-class probability | 0.999941 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9168227 106 + 20766785 UCAAAAUAACACUUAUUAUUGACAUUUUCUAAUUAUUCAACUGUUUAGCAGUGCUUUCGUUUCGCACGAUUAUUGAUUUGUUCAGUGAACUGAAAGCCAGUCAAUG ................(((((((................((((.....))))(((((((.(((((((((........))))...))))).)))))))..))))))) ( -24.30) >DroSec_CAF1 52607 106 + 1 UCAAAAUAACACUUAUAAUUGGCAUUUUCUAAUUAUUCAACUGUUUAGCAGAGCUUUCGGUUCGCACGAUUACUGAUUUGUUCAGUGAGCUGAAAGCCAGUCAAUG .................((((((.................(((.....))).(((((((((((((((((........))))...)))))))))))))..)))))). ( -28.60) >DroSim_CAF1 44934 106 + 1 UCAAAAUAACACUUAUAAUUGGCAUUUUCUAAUUAUUCAACUGUUUAGCAGUGCUUUUGGUUCGCACGAUUAUUGAUUUGUUCAGUGAACUGAAAGCCAGUCAAUG .................((((((................((((.....))))(((((..((((((((((........))))...))))))..)))))..)))))). ( -27.10) >DroEre_CAF1 45476 106 + 1 UCAAAAUAACACUUAUAAUUGGCAUUUUCUAAUUAUUCAACUGUUUAUUAGUGCUUCUGGUUCGCACGAUUAUUGAUUUGUUCAGUGAGCUGAAAGCCAGUCAAUG .................((((((................((((.....))))((((..(((((((((((........))))...)))))))..))))..)))))). ( -21.80) >DroYak_CAF1 43680 106 + 1 UCAAAAUAACACUUAUAAUUGGCAUUUUCUAAUUAUUCAACUGUUUAUCAGUGCUUCUGGUUCGCACGAUUAUUGAUUUGUUCGGUGAGCUGAAAGCUAGUCAAUG .................((((((................((((.....))))((((..(((((((.(((.((......)).))))))))))..))))..)))))). ( -26.30) >consensus UCAAAAUAACACUUAUAAUUGGCAUUUUCUAAUUAUUCAACUGUUUAGCAGUGCUUUUGGUUCGCACGAUUAUUGAUUUGUUCAGUGAGCUGAAAGCCAGUCAAUG .................((((((................((((.....))))(((((((((((((((((........))))...)))))))))))))..)))))). (-25.08 = -25.08 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:04 2006