Locus 2594

Sequence ID 2R_DroMel_CAF1
Location 9,155,188 – 9,155,278
Length 90
Max. P 0.916863
window4274

overview

Window 4

Location 9,155,188 – 9,155,278
Length 90
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 80.92
Mean single sequence MFE -23.00
Consensus MFE -17.50
Energy contribution -18.82
Covariance contribution 1.32
Combinations/Pair 1.17
Mean z-score -2.01
Structure conservation index 0.76
SVM decision value 1.11
SVM RNA-class probability 0.916863
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9155188 90 + 20766785
A--------UUCUGUCGAAUAUUGAGUCCGGCAUUUGACGCCACCAAUCCGGAUUCUGGACUCAUGACUUUGAUUU----UUU--UUUCCAUUUAUUGGACGCA
.--------....((((((...((((((((((.......))).((.....)).....)))))))....))))))..----...--..((((.....)))).... ( -24.00)
>DroSec_CAF1 29551 102 + 1
UUUUUACUGCUCCGUCGAAUAUUGAGUCCGGCAUUUGACGCCACCAAUCCGUAU-CCGUACUCAUGAUUUUGAUUUUGAUUUUU-UUUCCAUUUAUUGGACGCA
........((...((((((...(((((.(((......(((.........)))..-))).)))))....))))))..........-..((((.....)))).)). ( -18.50)
>DroSim_CAF1 29423 101 + 1
UUUUUGCUCCUCCGUCGAAUAUUGAGUCCGGCAUUUGACGCCACCAAUCCGGAU-CCGUACUCAUGAUUUUGAUUUUGAUUUU--UUUCCAUUUAUUGGACGCA
....(((......((((((...(((((.(((.(((((............)))))-))).)))))....)))))).........--..((((.....)))).))) ( -21.30)
>DroEre_CAF1 32687 91 + 1
UU---G---CUC-CUCGAAUAUUGAGUCCGCCAUUUGACGCCACCAAUCCGAAUGGCGGACUCAUGAUUUUCAUUUUGAUUUUGAUUUUGAUUUUUUG------
..---.---...-...(((...(((((((((((((((............))))))))))))))).....)))..........................------ ( -27.20)
>DroYak_CAF1 30491 99 + 1
UUUGCGCUACUCCGUCGAAUAUUGAGUCCGGCAUUUGACGCCACCAAUCCGGAUG-CGGGCUCAUGAUUUUGAUUUUGAUUUU--UUCCCAUUUAUUGGACA--
.............((((((...((((((((.((((((............))))))-))))))))....)))))).........--...(((.....)))...-- ( -24.00)
>consensus
UUU__GCU_CUCCGUCGAAUAUUGAGUCCGGCAUUUGACGCCACCAAUCCGGAU_CCGGACUCAUGAUUUUGAUUUUGAUUUU__UUUCCAUUUAUUGGACGCA
.............((((((...(((((((((.(((((............))))).)))))))))....)))))).............((((.....)))).... (-17.50 = -18.82 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:00 2006