Locus 2593

Sequence ID 2R_DroMel_CAF1
Location 9,154,756 – 9,154,847
Length 91
Max. P 0.912855
window4272 window4273

overview

Window 2

Location 9,154,756 – 9,154,847
Length 91
Sequences 4
Columns 91
Reading direction forward
Mean pairwise identity 84.10
Mean single sequence MFE -25.71
Consensus MFE -16.65
Energy contribution -16.90
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.08
Structure conservation index 0.65
SVM decision value 0.57
SVM RNA-class probability 0.783839
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9154756 91 + 20766785
ACAAGCCACGCACAAAAUUAGAAACGUGCGUGCAACACAGACCGCAGGAGGGGUGGUGGGGGGUAUGGUGUUGGUGAAACGAAGGGGUUGA
.(((.((((((((............)))))).((((((..(((.(..............).)))...))))))...........)).))). ( -25.54)
>DroSec_CAF1 29124 86 + 1
ACAAGCCACGCACAAAAUUAGAAACGUGCGUGCAACACAGACCGCAGGGGGAGGGGUGGGGG---CGGUGU--GUGAAACGAAGGGGUUGG
.(((.((((((((............))))))....((((.(((((................)---)))).)--)))........)).))). ( -27.89)
>DroEre_CAF1 32247 77 + 1
ACAAGCCACGCACAAAAUUAGAAACGUGCGUGGAACACUGACCGCAGGGGGAG-GGUGGG-------------GUGAACCGAAGGGGUAGG
.....((((((((............))))))))..((((..((((........-.)))))-------------)))..((....))..... ( -24.30)
>DroYak_CAF1 30067 77 + 1
ACAAGCCACGCACAAAAUUAGAAACGUGCGUGGAACACUGACCGCAGGGGGUG-GGUGGG-------------GUGUAUCGAAGGGGUUGG
(((..((((((((............))))))))..((((.(((......))).-))))..-------------.))).((....))..... ( -25.10)
>consensus
ACAAGCCACGCACAAAAUUAGAAACGUGCGUGCAACACAGACCGCAGGGGGAG_GGUGGG_____________GUGAAACGAAGGGGUUGG
.(((.((((((((............))))))..........((((..........)))).........................)).))). (-16.65 = -16.90 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 9,154,756 – 9,154,847
Length 91
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 84.10
Mean single sequence MFE -20.14
Consensus MFE -13.73
Energy contribution -13.72
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.32
Structure conservation index 0.68
SVM decision value 1.09
SVM RNA-class probability 0.912855
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9154756 91 - 20766785
UCAACCCCUUCGUUUCACCAACACCAUACCCCCCACCACCCCUCCUGCGGUCUGUGUUGCACGCACGUUUCUAAUUUUGUGCGUGGCUUGU
..................((((((...(((..................)))..))))))((((((((..........))))))))...... ( -18.37)
>DroSec_CAF1 29124 86 - 1
CCAACCCCUUCGUUUCAC--ACACCG---CCCCCACCCCUCCCCCUGCGGUCUGUGUUGCACGCACGUUUCUAAUUUUGUGCGUGGCUUGU
.(((.((....((..(((--(.((((---(................))))).))))..))(((((((..........))))))))).))). ( -25.09)
>DroEre_CAF1 32247 77 - 1
CCUACCCCUUCGGUUCAC-------------CCCACC-CUCCCCCUGCGGUCAGUGUUCCACGCACGUUUCUAAUUUUGUGCGUGGCUUGU
...(((.....))).(((-------------...(((-(.......).)))..)))..(((((((((..........)))))))))..... ( -17.90)
>DroYak_CAF1 30067 77 - 1
CCAACCCCUUCGAUACAC-------------CCCACC-CACCCCCUGCGGUCAGUGUUCCACGCACGUUUCUAAUUUUGUGCGUGGCUUGU
..............((((-------------...(((-((.....)).)))..)))).(((((((((..........)))))))))..... ( -19.20)
>consensus
CCAACCCCUUCGUUUCAC_____________CCCACC_CUCCCCCUGCGGUCAGUGUUCCACGCACGUUUCUAAUUUUGUGCGUGGCUUGU
.................................(((....((......))...)))...((((((((..........))))))))...... (-13.73 = -13.72 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:59 2006