| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,153,277 – 9,153,369 |
| Length | 92 |
| Max. P | 0.976080 |
| Location | 9,153,277 – 9,153,369 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 77.25 |
| Mean single sequence MFE | -26.01 |
| Consensus MFE | -20.90 |
| Energy contribution | -20.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.80 |
| SVM decision value | 1.76 |
| SVM RNA-class probability | 0.976080 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9153277 92 + 20766785 GCAGCAUCAGCGGUCGUCGAAAGG----AGGAAACUGCUGACUUCACCUUGAUGCAUGCGCUUUUCAUUGCAACCCAUGCACAC-------ACACGCAC------GCAC ((.(((((((.(((.(((...((.----((....)).)))))...)))))))))).((((........((((.....))))...-------...)))).------)).. ( -28.34) >DroSec_CAF1 27743 86 + 1 GCAGCAUCAGCGGUCGUCGAAAGG----AGGAAACUGCUGACUUCACCUUGAUGCAUGCGCUUUUCAUUGCAACCCGCA----C-------ACACAC--------ACAC ((((((((((.(((.(((...((.----((....)).)))))...)))))))))).)))((........))........----.-------......--------.... ( -25.30) >DroYak_CAF1 28578 76 + 1 GCAGCAUCAGCGGUCGUCGAAAGG----AGGAAACUGCUGACUUCACCUUGAUGCAUGCGCUUUUCAUUGCAACCCACA----C------------------------- ((((((((((.(((.(((...((.----((....)).)))))...)))))))))).)))((........))........----.------------------------- ( -25.30) >DroAna_CAF1 31404 102 + 1 GCAGCAUCAGCGGUC---GAAAGGCGAAAGGAAACUGCUGACUUCACCUUGAUGCAUGCGCUUUUCAAUGCAAUCCUCA----CUCCUGACACACACACAUACUCCCUC ((((((((((.(((.---(((.(((...((....)))))...))))))))))))).)))((........))........----.......................... ( -25.10) >consensus GCAGCAUCAGCGGUCGUCGAAAGG____AGGAAACUGCUGACUUCACCUUGAUGCAUGCGCUUUUCAUUGCAACCCACA____C_______ACACAC_________CAC ((((((((((.(((....(((.(.....((....)).....)))))))))))))).)))((........))...................................... (-20.90 = -20.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:57 2006