Locus 2591

Sequence ID 2R_DroMel_CAF1
Location 9,151,443 – 9,151,546
Length 103
Max. P 0.820909
window4270

overview

Window 0

Location 9,151,443 – 9,151,546
Length 103
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 79.35
Mean single sequence MFE -19.26
Consensus MFE -15.64
Energy contribution -16.08
Covariance contribution 0.44
Combinations/Pair 1.07
Mean z-score -1.60
Structure conservation index 0.81
SVM decision value 0.68
SVM RNA-class probability 0.820909
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9151443 103 - 20766785
A-AAAAUCCCCCAAGUGCGUUUGCCACUUGAUGUGGCAUCUAAGGAAACCCGAAUCUGCCACGCCUCCCCACACCACUCCCCAACCGAGCGAACCCAUCUCGUC
.-.........((((((.(....)))))))..((((((.....((....)).....)))))).......................((((.........)))).. ( -20.70)
>DroPse_CAF1 22755 82 - 1
A-AAAUUCCCCCAAGUGCGUUUGCCACUUGAUGUGGCAUCUAGCGAAACCCGAGGCUGCUCCU---C----C--CCCUCCCCAUCC--------CCAUCC----
.-.............(((...((((((.....))))))....)))......((((.....)))---)----.--............--------......---- ( -17.00)
>DroSec_CAF1 25992 100 - 1
A-AAAAUCCCCCAAGUGCGUUUGCCACUUGAUGUGGCAUCUAAGGAAACCCGAAUCUGCCACGACUCCCCAC--CCCUGCCCGUCC-AGCAAAACCAUCUCGUC
.-.........((((((.(....)))))))..((((((.....((....)).....))))))(((.......--...(((......-.)))..........))) ( -20.35)
>DroSim_CAF1 24558 101 - 1
AAAAAAUCCCCCAAGUGCGUUUGCCACUUGAUGUGGCAUCUAAGGAAACCCGAAUCUGCCACGACUCCCCAC--CCCUGCCCGUCC-AGCAAAACCAUCUCGUC
...........((((((.(....)))))))..((((((.....((....)).....))))))(((.......--...(((......-.)))..........))) ( -20.35)
>DroEre_CAF1 28994 88 - 1
AAAAAAUCCCCCAAGUGCGUUUGCCACUUGAUGUGGCAUCUAAGGAAACCCGAAUCCGCCACA---------------CACCGCCC-ACCAAACCCAUCUCGUC
...........((((((.(....))))))).((((((......((....))......))))))---------------........-................. ( -17.90)
>consensus
A_AAAAUCCCCCAAGUGCGUUUGCCACUUGAUGUGGCAUCUAAGGAAACCCGAAUCUGCCACG_CUCCCCAC__CCCUCCCCGUCC_AGCAAAACCAUCUCGUC
...........((((((.(....)))))))..((((((.....((....)).....)))))).......................................... (-15.64 = -16.08 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:56 2006