| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,135,389 – 9,135,492 |
| Length | 103 |
| Max. P | 0.772109 |
| Location | 9,135,389 – 9,135,492 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 81.05 |
| Mean single sequence MFE | -31.80 |
| Consensus MFE | -25.67 |
| Energy contribution | -26.03 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.772109 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9135389 103 - 20766785 --GUGGCAAGCCGGGACUCG-----UAACGUAAAAAGUAUUUGCACAACU--CUCAAGUGGGUCAAAUGAUUAGGCGGCAUGAUGAAGUGCCU-U-GCCACUUGAGCCGC--CAG---C --.((((.............-----....(((((.....)))))......--((((((((((((.........)))(((((......))))).-.-.)))))))))..))--)).---. ( -31.20) >DroVir_CAF1 17458 97 - 1 GGGUGGGA-A---------------CAACAUAAAAAGUAUUUGCUCAACUCUCUCAAGUGGGUCAAAUGAUUAGGCGGCAUGAUGAAGUGCCUUU-GCCACUUGAGCCGA--CGC---A (.((.((.-.---------------..........(((....))).......((((((((((((.........)))(((((......)))))...-.))))))))))).)--).)---. ( -28.50) >DroGri_CAF1 13070 98 - 1 GUGUGGCA-A---------------GAACGCAAAAAGUAUUUGCACAGCU--CUCAAGUGGGUCAAAUGAUUAGGCGGCAUGAUGAAGUGCCUUU-GCCACUUGAGCCGA--CGCCAAA (((((((.-.---------------....(((((.....)))))......--.(((((((((((.........)))(((((......)))))...-.))))))))))).)--))).... ( -33.50) >DroWil_CAF1 14426 103 - 1 UGAGGGCG-UUUGCU----A-----CAACGUAAAAAGUAUUUGCACAACU--CUCAAGUGGGUCAAAUGAUUAGGCGGCAUGAUGAAGUGCCU-UCGCCACUUGAGCCGCUUCAG---C ((((((((-..((((----.-----..........))))..)))......--((((((((((((....)))..((.(((((......))))).-)).)))))))))...))))).---. ( -32.30) >DroMoj_CAF1 16457 95 - 1 GGGUGGCA-A---------------CUACGUAAAAAGUAUUUGCACAACU--CUCAAGUGGGUCAAAUGAUUAGGCGGCAUGAUGAAGUGCCUUU-GCCACUUGAGCCGG--CAC---A ..((((((-(---------------.(((.......))).))))......--((((((((((((.........)))(((((......)))))...-.)))))))))....--)))---. ( -31.60) >DroAna_CAF1 14137 106 - 1 GGGUGGCA----GGGACUCUCGCUUGAACGUAAAAAGUAUUUGCACAACU--CUCAAGUGGGUCAAAUGAUUAGGCGGCAUGAUGAAGUGCCU-U-GCCACUCGAGCCGU--CGC---C ((((((((----((......(((((((.((((((.....)))))...(((--(......)))).....).)))))))((((......))))))-)-))))))).......--...---. ( -33.70) >consensus GGGUGGCA_A_______________CAACGUAAAAAGUAUUUGCACAACU__CUCAAGUGGGUCAAAUGAUUAGGCGGCAUGAUGAAGUGCCU_U_GCCACUUGAGCCGA__CAC___A ....(((......................(((((.....))))).........(((((((((((.........)))(((((......))))).....)))))))))))........... (-25.67 = -26.03 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:54 2006