Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,131,741 – 9,131,851 |
Length | 110 |
Max. P | 0.780410 |
Location | 9,131,741 – 9,131,851 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.48 |
Mean single sequence MFE | -40.43 |
Consensus MFE | -28.53 |
Energy contribution | -30.70 |
Covariance contribution | 2.17 |
Combinations/Pair | 1.14 |
Mean z-score | -1.88 |
Structure conservation index | 0.71 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.780410 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9131741 110 - 20766785 GCGGA--------GA--CAAUCGCACAUUUGGGAGCCCUUCAAUCCGAUGGGGGCACAGGCACUUGAGGUUAACCCUCGAAUAUGUCUGUCGGUUGAGGGGAUUACCCUGGGUCGUGUGA ..(..--------..--)..(((((((((..((..((((((((.((((((((.((....))..((((((.....)))))).....)))))))))))))))).....))..))).)))))) ( -45.60) >DroSec_CAF1 6929 108 - 1 CCGGA--------GA--CAAUCGCACAUUUGGGAGCCCUUCAAUCCGAUGGGGGCCCAGGAACUUGAGGUUAACCUUCGAA--UGUCUGUCGGUUGAGGGGAUUUCCCUGGGUCGUGUGA ..(..--------..--)..((((((((((((((.((((((((.(((((((....)).(((..((((((.....)))))).--..))))))))))))))))...)))).)))).)))))) ( -43.50) >DroSim_CAF1 6913 108 - 1 CCGGA--------GA--CAAUCGCACAUUUGGGAGCCCUUCAAUCCGAUGGGGGCCCAGGCACUUGAGGUUAACCUUCGAA--UGUCUGUCGGUUGAGGGGAUUUCCCUGGGUCGUGUGA ..(..--------..--)..((((((((((((((.((((((((.(((((((....))(((((.((((((.....)))))).--))))))))))))))))))...)))).)))).)))))) ( -48.10) >DroEre_CAF1 6741 107 - 1 CUGGA--------GA--CAAUCGCACAUUUGGGAGCCCUUCAUUCCGAUGG-GGCCCAGGCACUUGAGGUUAACCUUCGAA--UGUCUGUCGGCUGAGGGGAUUUUCCUGGGUCGUGUGA .((..--------..--)).(((((((((..(((.(((((((..((....)-)(((((((((.((((((.....)))))).--))))))..))))))))))....)))..))).)))))) ( -46.20) >DroYak_CAF1 6952 116 - 1 CUGGAUUUGCUGGAA--CAAUCGCACAUUUGGGAGCCCUUCAUUCCGAUGGGGGCCCAGGCACUUGAGGUUAACCUUCGAA--UGUCUGUCGGUUGAGGGGAUUUCCUUGGGUCGUGUGA (..(.....)..)..--...((((((((..((((.(((((((..(((((((....))(((((.((((((.....)))))).--)))))))))).)))))))...))).)..)).)))))) ( -44.00) >DroAna_CAF1 10044 88 - 1 UUGGA--------GAACAAAACGCACAUUUGGGAGUCCUUUAAG-----------CCAGACACUUGUGGUUAACCUUUGAA--UGUCAUUUGCUUCUGUGG---------GGU--UGUGA .....--------..((((..(.((((...((....))...(((-----------(..((((.(((.((....))..))).--))))....)))).)))))---------..)--))).. ( -15.20) >consensus CCGGA________GA__CAAUCGCACAUUUGGGAGCCCUUCAAUCCGAUGGGGGCCCAGGCACUUGAGGUUAACCUUCGAA__UGUCUGUCGGUUGAGGGGAUUUCCCUGGGUCGUGUGA ....................(((((((((..((..((((((((.((((........((((((.((((((.....))))))...)))))))))))))))))).....))..))).)))))) (-28.53 = -30.70 + 2.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:52 2006