| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,128,102 – 9,128,194 |
| Length | 92 |
| Max. P | 0.512417 |
| Location | 9,128,102 – 9,128,194 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 82.37 |
| Mean single sequence MFE | -25.98 |
| Consensus MFE | -15.73 |
| Energy contribution | -15.90 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.512417 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9128102 92 + 20766785 -----------GGUGUGUUG-AGCGCCUGCAGGAUAUUAUAUAAUGUGUAGUAAUUUGAAUUUGAAGUGUGCGGCGGCGAAUGAAGCUUAUAAGCCGCAGACAG------------- -----------(((((....-.)))))..((((.((((((((...)))))))).))))........((.(((((((((.......))).....)))))).))..------------- ( -27.50) >DroSec_CAF1 3409 93 + 1 -----------GGUGUGUUGGGGCGCCUGCAGGAUAUUAUAUAAUGUGUAGUAAUUUGAAUUUGAAGUGUGCGGCAGCGAAUGAAGCUUAUAAGCCGCAGACAG------------- -----------(((((......)))))..((((.((((((((...)))))))).))))........((.(((((((((.......))).....)))))).))..------------- ( -27.20) >DroSim_CAF1 3398 93 + 1 -----------GGUGUGUUGGGGCGCCUGCAGCAUAUUAUAUAAUGUGUAGUAAUUUGAAUUUGAAGUGUGCGGCAGCGAAUGAAGCUUAUAAGCCGCACACAG------------- -----------(((((......)))))(((.(((((((....))))))).))).............((((((((((((.......))).....)))))))))..------------- ( -32.80) >DroEre_CAF1 3352 105 + 1 -----------GGUGUGCUG-AUAGCCUGCAGGAUAUUAUAUAAUGUGUAGUAAUUUGAAUUUGAAGUGUGUGGCGGCGAAUGAAGCUUAUAAGCCGCAGACAGUAGAGAGUAGACA -----------.((.((((.-........((((.((((((((...)))))))).))))..((((..((.(((((((((.......))).....)))))).))..)))).)))).)). ( -26.20) >DroWil_CAF1 5052 98 + 1 C----UGUGUGAGAGUGCUA-AGAGCCUGCAGGAUAUUAUAUAAUGUGUAGUAAUUUGAAUUUGAAGUGUGUGGCAUAGAAUGAAGCUUAUAAGUCUUAUAC-G------------- .----.((((((((((((((-...((((.((((.((((((((...)))))))).)))).......)).)).))))))...((((...))))...))))))))-.------------- ( -19.30) >DroAna_CAF1 4384 103 + 1 CGAUUCGGGUGGGAGUGAUG-AGAGCCUGCAGGAUAUUAUAUAAUGUGUAGUAAUUUGAAUUUGAAGUGUGUGGCAUCGAAUGAAGCUUAUAAGCCGCAGACAU------------- .((((((((..((..(....-.)..))..)....((((((((...))))))))..)))))))....((.((((((..................)))))).))..------------- ( -22.87) >consensus ___________GGUGUGUUG_AGAGCCUGCAGGAUAUUAUAUAAUGUGUAGUAAUUUGAAUUUGAAGUGUGCGGCAGCGAAUGAAGCUUAUAAGCCGCAGACAG_____________ .............................((((.((((((((...)))))))).))))........((.(((((((((.......))).....)))))).))............... (-15.73 = -15.90 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:50 2006