| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,122,376 – 9,122,468 |
| Length | 92 |
| Max. P | 0.609239 |
| Location | 9,122,376 – 9,122,468 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 77.68 |
| Mean single sequence MFE | -17.54 |
| Consensus MFE | -1.30 |
| Energy contribution | -1.30 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.07 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.609239 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9122376 92 + 20766785 CCGCCACUGUAAAUUGGAAAAUAAAGCCGGAAGCUACUCAUAU-AUAUAUAUAUAAAUACGAUAUAU-GUAUGUG--CUUAACUCACAAUUCG---GUG ....(((((..(((((((......((.(....)))...(((((-((((((((.........))))))-)))))))--......)).)))))))---))) ( -19.20) >DroSec_CAF1 10497 89 + 1 CCGCCACUGUAAAUUGGAAAAUAAAGCCGGAAGCUACUUAUAU-A--CGUAUAUAAAUACGAUAUAU-GUA------UUUAACUAUCCAUUCGGCGGUG ....((((((....((((......((.(....)))..(((.((-(--(((((((.......))))))-)))------).)))...))))....)))))) ( -22.00) >DroSim_CAF1 11314 89 + 1 CCGCCACUGUAAAUUGGAAAAUAAAGCCGGAAGCUACUAAUAU-A--CGUAUAUAAAUACUAUAUAU-GUG------UUUAACUAUCCAUUCGGCGGUG ....((((((....((((......((.(....)))......((-(--((((((((.....)))))))-)))------).......))))....)))))) ( -22.50) >DroEre_CAF1 10315 86 + 1 CCGCCACUGUAAAUUGGAAAAUCAAGCCCGCAGGUA-------CA--CACAUAUAAAUACUAUAUACUAUGCGAUA-UAUAACUUGCCAUUCG---GUG ....(((((.....(((...........((((((((-------..--....((((.....)))))))).))))...-.........)))..))---))) ( -11.20) >DroYak_CAF1 10664 94 + 1 CCGCCACUGUAAAUUGGAAAAUAAAGCCGGAAGGUAAUCACAUCA--CAUAUAUAAAUACUAUAUACUAUAUGUAACCGUAACUCCCCAUUCG---CUG ........(..(((.((........(((....)))....((((..--..((((((.....))))))....))))...........)).)))..---).. ( -12.80) >consensus CCGCCACUGUAAAUUGGAAAAUAAAGCCGGAAGCUACUCAUAU_A__CAUAUAUAAAUACUAUAUAU_GUA_G____UUUAACUAUCCAUUCG___GUG ...(((........))).................................................................................. ( -1.30 = -1.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:49 2006