Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,122,265 – 9,122,360 |
Length | 95 |
Max. P | 0.943265 |
Location | 9,122,265 – 9,122,360 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 79.21 |
Mean single sequence MFE | -23.68 |
Consensus MFE | -11.35 |
Energy contribution | -12.97 |
Covariance contribution | 1.61 |
Combinations/Pair | 1.24 |
Mean z-score | -2.91 |
Structure conservation index | 0.48 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.943265 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9122265 95 - 20766785 ACGUAUUGCGAUGGCAGCUG-GUUUGCUUAGCCGAAAAAGUUGGUCU--AAACAAAUGCGAAAGCAACACGUAAAAACAAAAUUGCAAAUAAAUUUUA .....(((((((........-(((((.((((((((.....)))).))--)).)))))((....))................))))))).......... ( -20.80) >DroGri_CAF1 11296 73 - 1 ACGUAGCUGGCUGGCAGCUG-----------UGGCAAAAGUUCUAA---ACACACAUACA---ACACCGCA--------AAAUUACGAAUAAAUUCUA .((((((((.....))))((-----------(((............---...........---...)))))--------....))))........... ( -11.47) >DroSec_CAF1 10386 95 - 1 ACGUAUUGCGAUGGCAGCUGGGUUUGCUUAGCCGAAAAAGUUGAGC---AAACAAAUGCGAGAGCAACACGUAAAAACAAAAUUGCAAAUAAAUUUUA ((((.((((..(.(((.....(((((((((((.......)))))))---))))...))).)..)))).))))......((((((.......)))))). ( -29.40) >DroSim_CAF1 11204 95 - 1 ACGUAUUGCGAUGGCAGCUGGGUUUGCUUAGCCGAAAAAGUUGAGC---AAACAAAUGCGAGAGCAACACGUAAAAACAAAAUUGCAAAUAAAUUUUA ((((.((((..(.(((.....(((((((((((.......)))))))---))))...))).)..)))).))))......((((((.......)))))). ( -29.40) >DroEre_CAF1 10205 94 - 1 ACGUAUUGCGAUGGCAGCUG-GUUUGCUUGGUCGGAAAAGUUGGGC---CGGCAAAUGCGAAAGCAACACGUAAAAACAAAAUUGCAAAUAAAUUUUA .....(((((((....((((-((..((((........))).)..))---))))...(((....)))...............))))))).......... ( -26.10) >DroYak_CAF1 10551 97 - 1 ACGUAGUGCGAUGGCAGCUG-GUUUGCUUAGUCGGAAAAGUUGGGCUAGCAGCAAAUGCGAAAGCAACACGUAAAAACAAAAUUGCAAAUAAAUUUUA ..((..((((.((((.((((-((..((((........))).)..)))))).))...(((....))).))))))...))((((((.......)))))). ( -24.90) >consensus ACGUAUUGCGAUGGCAGCUG_GUUUGCUUAGCCGAAAAAGUUGGGC___AAACAAAUGCGAAAGCAACACGUAAAAACAAAAUUGCAAAUAAAUUUUA ((((.((((..(.(((..((.....(((((((.......)))))))......))..))).)..)))).)))).......................... (-11.35 = -12.97 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:48 2006