Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,116,167 – 9,116,262 |
Length | 95 |
Max. P | 0.719569 |
Location | 9,116,167 – 9,116,262 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 75.72 |
Mean single sequence MFE | -30.77 |
Consensus MFE | -8.11 |
Energy contribution | -9.87 |
Covariance contribution | 1.76 |
Combinations/Pair | 1.21 |
Mean z-score | -1.80 |
Structure conservation index | 0.26 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.719569 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9116167 95 + 20766785 UCUCCAUCGGCCUGGUU---UGGCUGCAGC----CCAAAGGGCAGCGAAGAAGGGAUGGCAAAAA---AUAGAUGAAAAUGAAAUCCUUU--UUUGGCGGUCGACGU ......((((((.....---........((----((...)))).((.((((((((((..((....---...........))..)))))))--))).))))))))... ( -30.76) >DroSec_CAF1 4296 95 + 1 CCUCCGUGGGCCUGGUU---UGGCUGCAGC----CCAAAGGGCAGCGGAGAAGGGAUGGCAA-AA---AUAGAUGAAAAUGAAAUCCUUUU-UUUGGCGCCCGCCGU .((((((..((((..((---.(((....))----).)).)))).))))))..(((.((.(((-((---(..(((.........)))...))-)))).)))))..... ( -35.00) >DroSim_CAF1 4285 96 + 1 CCUCCGUCGGCCUGGUU---UGGCUGCAGC----CCAAAGGGCAGCGGAGAAGGGAUGGCAAAAA---AUAGAUGAAAAUGAAAUCCUUUU-UUUGGCGCCCGCCGU .(((((((((((.....---.)))))..((----((...)))).))))))..(((.((.((((((---(..(((.........)))..)))-)))).)))))..... ( -37.90) >DroYak_CAF1 4503 87 + 1 CUUCCAACGGCCUGGUU---UGGCUGCAGC----CCAA-------CGGCGAAGGGAAGGCGAAAA---AUAAAUGAAAAUGAAAUCCUU---UUUGGCGGCCGCUGU ....((.(((((..(((---.(((....))----).))-------).(((((((((.........---................)))))---))..))))))).)). ( -22.91) >DroAna_CAF1 4196 93 + 1 -----UUCGGCCUGGUUUGUUGGCUGGACACCAUCCAAAAGGC---GAAAAA------CCAAAAAAGGAUGAAUGAAAAUGAAAUCCUUUUUUUCGGCGACUGGUGU -----.((((((.........))))))((((((.......(.(---((((((------......((((((..((....))...))))))))))))).)...)))))) ( -27.30) >consensus CCUCCAUCGGCCUGGUU___UGGCUGCAGC____CCAAAGGGCAGCGGAGAAGGGAUGGCAAAAA___AUAGAUGAAAAUGAAAUCCUUUU_UUUGGCGCCCGCCGU .......(((((.........))))).......................((((((((..((..................))..))))))))...((((....)))). ( -8.11 = -9.87 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:47 2006