| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,100,616 – 9,100,710 |
| Length | 94 |
| Max. P | 0.539912 |
| Location | 9,100,616 – 9,100,710 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 69.93 |
| Mean single sequence MFE | -14.98 |
| Consensus MFE | -2.38 |
| Energy contribution | -3.34 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.16 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539912 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9100616 94 - 20766785 GACGAACAGAAAACACAAAAGCAAACGCACAAAAAUAAAUGUUUGCUCGGCCCUUUACUUCUUCUUCUUCGGCCAAACAUACACACGCAGACAC (.((...............((((((((............)))))))).((((..................))))...........)))...... ( -12.77) >DroPse_CAF1 10322 73 - 1 GACGAAAGAGAAACACAAAAGCAAACGCACAAAAA----UGUUUGUUGCG----------------UUGCGGCCGACGAAGGGCCCAUA-UUAC ..(....)............((((.((((((((..----..)))).))))----------------))))((((.......))))....-.... ( -19.60) >DroSec_CAF1 10765 83 - 1 GACGAACAGAAAACACAAAAG------CACAAAAAUAAAUGUUUGCUCGGCCCUUUACUUCU---UCUUCGGCCAAACAUACACACGCA--CAC ((((((((.............------............)))))).))((((..........---.....))))...............--... ( -9.97) >DroSim_CAF1 11011 89 - 1 GACGAACAGAAAACACAAAAGCAAACGCACAAAAAUAAAUGUUUGCUCGGCCCUUUACUUCU---UCUUCGGCCAAACAUACACACGCA--CAC (.((...............((((((((............)))))))).((((..........---.....))))...........))).--... ( -12.96) >DroPer_CAF1 11969 73 - 1 GACGAAAGAGAAACACAAAAGCAAACGCACAAAAA----UGUUUGUUGCG----------------UUGCGGCCGACGAAGGGCCCAUA-UUAC ..(....)............((((.((((((((..----..)))).))))----------------))))((((.......))))....-.... ( -19.60) >consensus GACGAACAGAAAACACAAAAGCAAACGCACAAAAAUAAAUGUUUGCUCGGCCCUUUACUUCU___UCUUCGGCCAAACAUACACACGCA__CAC ...................((((((((............))))))))............................................... ( -2.38 = -3.34 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:44 2006