Locus 258

Sequence ID 2R_DroMel_CAF1
Location 1,643,536 – 1,643,629
Length 93
Max. P 0.806163
window551

overview

Window 1

Location 1,643,536 – 1,643,629
Length 93
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 52.18
Mean single sequence MFE -28.54
Consensus MFE -10.86
Energy contribution -12.06
Covariance contribution 1.20
Combinations/Pair 1.38
Mean z-score -1.02
Structure conservation index 0.38
SVM decision value 0.63
SVM RNA-class probability 0.806163
Prediction RNA
WARNING Mean pairwise identity too low.

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1643536 93 - 20766785
UAGCCCCCGGGAAAAGCAGC---------AGCGCGUGCUGCAAUUACAGCACCCAACGCU---------------UACAGC---UAAGCCAAUGAGUUGGCACUUGCGCUAACAACAAGA
((((...((((...(((...---------((((.((((((......))))))....))))---------------....))---)..(((((....))))).)))).))))......... ( -26.80)
>DroPse_CAF1 58068 104 - 1
CGGGGGAGAGAGGGGCAGCCCUAAGCUCUGGCGCGUGUUGCACUCUUAG-GCUCCUACAC---------------ACAACUUCCACCACAGCUUACAAGGUUACAGUAAACAAAGACAGA
.(((((((((((..(((((.(...((....))..).))))).))))(((-....)))...---------------....))))).))..((((.....)))).................. ( -24.30)
>DroSec_CAF1 29360 96 - 1
UAGCCCCCGGGAAAAGCAGC---------AGCGCGUGCUGCAAUUACAGCACCCAACGCU---------------UACAGCUGCUAAGCCAAUGAGUUGGCACUUGCGCUAACAACAAGA
((((...((((...((((((---------((((.((((((......))))))....))))---------------....))))))..(((((....))))).)))).))))......... ( -33.70)
>DroEre_CAF1 32857 93 - 1
UAGCCCCCGGGAAAAGCAGC---------AGCGCGUGUUGCAAUUACAGCACCCAACGCU---------------UACAGC---UAAGCCAAUGAGUUGGCACCUGCGCUAACAACAAGA
((((...((((...(((...---------((((.((((((......))))))....))))---------------....))---)..(((((....))))).)))).))))......... ( -27.20)
>DroPer_CAF1 52507 119 - 1
AGGGGGGGAGAGGGGCAGCCCUAAGCUCUGGCGCGUGUUGCACACUUGG-GCUCCUACACACGCAGAACCCCUACACAACUUCCACCACAGCUUACAAGGUUACAGUAAACAAAGACAGA
((((((((..((((....))))...)))..(((.((((.((........-))....)))).)))....))))).....(((...(((...........)))...)))............. ( -30.70)
>consensus
UAGCCCCCGGGAAAAGCAGC_________AGCGCGUGUUGCAAUUACAGCACCCAACGCU_______________UACAGCU_CUAAGCCAAUGAGUUGGCACCUGCGCUAACAACAAGA
.............................(((((((((((......))))))...................................(((((....)))))....))))).......... (-10.86 = -12.06 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:48 2006