Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,095,800 – 9,095,891 |
Length | 91 |
Max. P | 0.548355 |
Location | 9,095,800 – 9,095,891 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 78.08 |
Mean single sequence MFE | -18.70 |
Consensus MFE | -8.63 |
Energy contribution | -9.80 |
Covariance contribution | 1.17 |
Combinations/Pair | 1.21 |
Mean z-score | -2.05 |
Structure conservation index | 0.46 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548355 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9095800 91 + 20766785 UUGCCCGUAUUUUUGGGUUAUCGCCCGGUCGUAUUUGUUUAUAGAGAAAGAGAGAAUUUUUUUUUUUGUCUUUUUUG---ACCUG--ACCACCUGU ..(((((......)))))........(((((((......))).((((((((.((((.......)))).)))))))).---....)--)))...... ( -20.30) >DroSec_CAF1 6206 82 + 1 UUGCCCGUAUUUUUGGGUUAUCGCCCGGUCGUAUUUGUUUAUAGCGAAAGAGAACUCUUUUUCUUUU-----UUUU-------UG--ACCACCUGU ..(((((......)))))........(((((.....((.....))(((((((....)))))))....-----....-------))--)))...... ( -18.40) >DroSim_CAF1 6457 87 + 1 UUGCCCGUAUUUUUGGGUUAUCGCCCGGUCGUAUUUGUUUAUAGAGAAAGAGAACUCUUUUUCUUUUUUUUUUUUU-------UG--ACCACCUGU ..(((((......)))))........(((((...........((((((((((....))))))))))..........-------))--)))...... ( -22.20) >DroEre_CAF1 6331 89 + 1 UUGCCCGUAUUUUUGGGUUAUCGCCCGGUCGUAUUUGUUUAUAGAGAAAGAGAACUCUUU---UU--CGCUUUUUUUCGUGUUUG--ACCACCUGU ..(((((......)))))........(((((.((.((.....((.(((((((....))))---))--).))......)).)).))--)))...... ( -21.20) >DroYak_CAF1 6612 84 + 1 UUGCCCGUAUUUUUGGGUUAUCGCCCGGUCGUAUUUGUUUAUAGAGAAAGAGAACUCUUUUUUUU--CGCUUUUUUU----------ACCACCUGU ..(((((......)))))........(((.(((.........(((((((((....))))))))).--.........)----------)).)))... ( -17.41) >DroAna_CAF1 6454 77 + 1 UU-----UUUUUUUGGGUUAUCGCC-ACCCGUAUUUGUUUAUGGU-AGAGAGAACUCUUUUUUUU--CC----------AGCCACACUCCACCUGU ..-----.......((((.......-)))).....(((...(((.-((((((....))))))...--))----------)...))).......... ( -12.70) >consensus UUGCCCGUAUUUUUGGGUUAUCGCCCGGUCGUAUUUGUUUAUAGAGAAAGAGAACUCUUUUUUUU__CGCUUUUUU_______UG__ACCACCUGU ......((((..((((((....))))))..)))).........(((((((((....)))))))))............................... ( -8.63 = -9.80 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:42 2006