Locus 2575

Sequence ID 2R_DroMel_CAF1
Location 9,086,057 – 9,086,177
Length 120
Max. P 0.959263
window4250

overview

Window 0

Location 9,086,057 – 9,086,177
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 91.67
Mean single sequence MFE -34.21
Consensus MFE -27.58
Energy contribution -28.21
Covariance contribution 0.63
Combinations/Pair 1.11
Mean z-score -2.98
Structure conservation index 0.81
SVM decision value 1.50
SVM RNA-class probability 0.959263
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9086057 120 + 20766785
UUCGCUGAUGCCCUGGUAGAAGAGUUUUCCAUUUACACAACAAUUUUGGAAAAUUCACACGAUCGGGACAGAUGUAUAGAUUGCAUUUUCCCACAGCUUCACCAGCUGCAUCUUCAAAUU
...(..(((((.(((((.(((((((((((((...............))))))))))........((((.(((((((.....))))))))))).....))))))))..)))))..)..... ( -38.76)
>DroSec_CAF1 50858 120 + 1
UUCGCUGCUGCCCUGGUAGCAGAGUUUUCCAUUUACACAACAAUUUUGGAAAAUUCACACGAUCGGAAAAGAUGUAGAGAUCGCAUUUUCCCACAGCUUCACCAGCUGCAUGUUCGAAUU
.(((.((((((....))))))((((((((((...............))))))))))...)))(((((.(((((((.......)))))))....(((((.....)))))....)))))... ( -33.16)
>DroSim_CAF1 53059 120 + 1
UUCGCUGCUGCCCUGGUAGAAGAGUUUUCCAUUUACACAACAAUUUUGGAAAAUUCACACGAUCGGGACAGAUGUAGAGAUUGCAUUUUCCCACAGCUUCAACAGCUGCAUGUUCGAAUU
...((((((((....))))..((((((((((...............))))))))))........((((.((((((((...)))))))))))).))))(((((((......)))).))).. ( -33.96)
>DroEre_CAF1 58139 120 + 1
UUUGCUGUUGCCCUGGUAGAAGAGUUUUCCAUUUCGACAACAAUUUUGGAAAAUUCACACGAUCGGAACAGAUGCGAAGAUUACAUCUUCCCACAGCUUCACCAGCUGCAAGAUCAAAUU
((((.(.((((.(((((.(((((((((((((...............))))))))))........(((..(((((.........))))))))......))))))))..)))).).)))).. ( -30.96)
>consensus
UUCGCUGCUGCCCUGGUAGAAGAGUUUUCCAUUUACACAACAAUUUUGGAAAAUUCACACGAUCGGAACAGAUGUAGAGAUUGCAUUUUCCCACAGCUUCACCAGCUGCAUGUUCAAAUU
.(((.((((((....))))..((((((((((...............)))))))))).)))))..((((.(((((((.....))))))))))).(((((.....)))))............ (-27.58 = -28.21 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:37 2006