Locus 2570

Sequence ID 2R_DroMel_CAF1
Location 9,083,325 – 9,083,443
Length 118
Max. P 0.986860
window4236

overview

Window 6

Location 9,083,325 – 9,083,443
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.76
Mean single sequence MFE -33.70
Consensus MFE -30.71
Energy contribution -30.95
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.70
Structure conservation index 0.91
SVM decision value 2.06
SVM RNA-class probability 0.986860
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9083325 118 - 20766785
UCUUUUUA-UGCGGCCUU-UUUCUUGGAACUCCACAUGCCACAUGCUAAGAUUUUUUGGGAUAGGCGUGAGAACGAAAUCGGCUUAAUUAGUCGGUUUCUACUAGGCAAACAGCAUCCGU
.......(-(((.((((.-.(((((((....)))((((((..((.(((((....))))).)).)))))))))).((((((((((.....))))))))))....)))).....)))).... ( -35.60)
>DroSec_CAF1 48118 117 - 1
UCUUUUUA-UGCUGCCUU-UUUCUUGGAACUCCACAUGCCACAUGCUACGAAG-UUUGGGAUAGGCGUGAGAACGAAAUCGGCUUAAUUAGUCGGUUUCUACUAGGCAAACAGCAUCCGU
.......(-((((((((.-.(((((((....)))((((((.((.(((....))-).)).....)))))))))).((((((((((.....))))))))))....))))....))))).... ( -34.00)
>DroSim_CAF1 50374 118 - 1
UUUUUUUA-UGCUGCCUUUUUUCUUGGAACUCCACAUGCCACAUGCUAAGAUU-UUUGGGAUAGGCGUGAGAACGAAAUCGGCUUAAUUAGUCGGUUUCUACUAGGCAAACAGCAUCCGU
.......(-((((((((...(((((((....)))((((((..((.(((((...-))))).)).)))))))))).((((((((((.....))))))))))....))))....))))).... ( -34.50)
>DroEre_CAF1 55547 118 - 1
UCUUUUUAAGGCUGGCUU-UUUCUUGGAACUCCACAUGCCACAUGCUAAGAUU-UUUGGGAUAGGCGUGAGAACGAAAUCGGCUUAAUUAGUCGGUUUCUACUAGGCGAACAGCAUCUGU
..........((((((((-.(((((((....)))((((((..((.(((((...-))))).)).)))))))))).((((((((((.....))))))))))....))))...))))...... ( -33.50)
>DroYak_CAF1 53428 118 - 1
UCUUUUUAAGGCUGCCUU-CUUCUUGGAACUCCACAUGCCACAUGCUAAGAUU-UUUGGGUUGGGCGUGAGAACGAACUCGGCUUAAUUAGUCGGUUUCUACUAGGCAAACAGCAUCUGC
.........(..(((((.-.(((((((....)))((((((.((..(((((...-)))))..)))))))))))).(((..(((((.....)))))..)))....)))))..)......... ( -30.90)
>consensus
UCUUUUUA_UGCUGCCUU_UUUCUUGGAACUCCACAUGCCACAUGCUAAGAUU_UUUGGGAUAGGCGUGAGAACGAAAUCGGCUUAAUUAGUCGGUUUCUACUAGGCAAACAGCAUCCGU
..........((((..........(((....)))..((((.((((((................)))))).....((((((((((.....)))))))))).....))))..))))...... (-30.71 = -30.95 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:24 2006