Locus 257

Sequence ID 2R_DroMel_CAF1
Location 1,643,205 – 1,643,315
Length 110
Max. P 0.620380
window550

overview

Window 0

Location 1,643,205 – 1,643,315
Length 110
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 69.95
Mean single sequence MFE -23.16
Consensus MFE -1.44
Energy contribution -1.60
Covariance contribution 0.16
Combinations/Pair 1.20
Mean z-score -1.80
Structure conservation index 0.06
SVM decision value 0.18
SVM RNA-class probability 0.620380
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1643205 110 - 20766785
ACAUAGUGUACAAAAGCAUUAG-GAGCUCG--GUUG---GUAUUACUCCAAUACC---AACAAGGCUUACAAUUGUCACUUUUAAUCAAAUAAUGUCAUGCGAGCCAACAUAAAAACAA
...((((((......)))))).-(.(((((--((((---(((((.....))))))---)))..(((........))).......................))))))............. ( -24.70)
>DroPse_CAF1 57545 118 - 1
AUAUAAUUUACGAGUGCACGAGUGUACUCGCGAAUGACAAAAUUAUUCUAGUGCCAGCAACAACGCCUCAAAUUGUCACUUGGAAUGAAAUAAUGUCACGCAUGUCGGCAUAAA-UCAC
.....(((..((((((((....))))))))..)))((((...(((((((((((.((((......)).......)).))).)))))))).....))))..((......)).....-.... ( -27.61)
>DroSec_CAF1 29029 106 - 1
AC----UGUACAUAAACGUUAG-AAGCUCG--UUUG---GUAUUACUCCAAUGCC---AACAAGGCUUACAAUUGUCGCUUUUAAUCAAAUAAUGUCAUGCGAGUCAACAUAAAAACAC
..----((.((((....(((((-((((..(--((.(---(((((.....))))))---)))..(((........))))))))))))......))))))..................... ( -19.40)
>DroEre_CAF1 32536 98 - 1
-----------GAAAAUAUUAG-GAGCUCG--UUUG---GUAUUACUGCAAUGCC---AACAAGGCUUAAAAUUGUCACUUUUAAUAAAAUAAUGUCAUGCAAGUCGACAUAAACA-GC
-----------.....((((((-(((...(--((.(---(((((.....))))))---)))..(((........))).))))))))).....(((((.........))))).....-.. ( -18.60)
>DroPer_CAF1 51988 118 - 1
AUAUAAUUUACGAGUGCACGAGUGUACUCGCGAAUAACAAAAAUAUUCUAGUGCCAGCAACAACGCCUCAAAUUGUCACUUGGAAUGAAAUAAUGUCACGCAUGUCGGCAUAAA-UCAC
.....(((..((((((((....))))))))..)))........((((((((((.((((......)).......)).))).))))))).....(((((((....)).)))))...-.... ( -25.51)
>consensus
ACAUA_UGUACGAAAGCAUUAG_GAGCUCG__AUUG___GUAUUACUCCAAUGCC___AACAAGGCUUAAAAUUGUCACUUUUAAUCAAAUAAUGUCAUGCAAGUCGACAUAAA_ACAC
............................................................................................(((((.........)))))........ ( -1.44 =  -1.60 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:47 2006