Locus 2568

Sequence ID 2R_DroMel_CAF1
Location 9,082,874 – 9,082,966
Length 92
Max. P 0.746237
window4233

overview

Window 3

Location 9,082,874 – 9,082,966
Length 92
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 81.13
Mean single sequence MFE -26.88
Consensus MFE -15.57
Energy contribution -15.45
Covariance contribution -0.12
Combinations/Pair 1.09
Mean z-score -2.17
Structure conservation index 0.58
SVM decision value 0.46
SVM RNA-class probability 0.746237
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9082874 92 + 20766785
AAAUUACGAGGGUUGCAAACGUCUUAGG--AAAGGAGAAAGAGAAGGAAUAACUUCUCCGUAGCUCAAUAGUU-UGGUGGUAGUUUUGCACU---ACC---------------
((((((...(((((((.....((((...--....))))..((((((......)))))).)))))))..)))))-)((((((.(.....))))---)))--------------- ( -24.50)
>DroSec_CAF1 47653 108 + 1
AAAUCACGAGGGUUGCAAACGUCUUAACAAAAAGGAGAAAGAGAAGGAAUGCCUUCU-UGUAGCUCAAUAGUU-UGGUGGUAGUUUUGAACUACUACCU---UAUAAUAAACA
.........(((((((...(..(((......)))..)...(((((((....))))))-))))))))....((.-.(((((((((.....))))))))).---.))........ ( -31.20)
>DroSim_CAF1 49911 106 + 1
AAAUCACGAGGGUUGCAAACGUCUUAACAAAAAGGAGAAAGAGAAGGAAUGCCUUCU-UGUAGCUCAAUAGUUUUGGUGGUAGUUUUGAACU---ACCU---UAUAAUAAGCA
.........(((((((...(..(((......)))..)...(((((((....))))))-))))))))....((((....((((((.....)))---))).---......)))). ( -26.80)
>DroYak_CAF1 52969 106 + 1
CAAUCACGAGGGUUGCAAACAUCUUAGG--AAAGUUGAAAGAGAAGGAAUGCCUUCU-UGUGGCUCAAUAGUU-UGGUGGUAGUUUUGCACA---UCCUGAACCUUAUAAACC
........(((((((((((((((...((--(..(((((..(((((((....))))))-).....)))))..))-)...))).).)))))).)---)))).............. ( -25.00)
>consensus
AAAUCACGAGGGUUGCAAACGUCUUAAC__AAAGGAGAAAGAGAAGGAAUGCCUUCU_UGUAGCUCAAUAGUU_UGGUGGUAGUUUUGAACU___ACCU___UAUAAUAAACA
..(((((.((((((((...(..(((......)))..)....((((((....))))))..)))))))........).)))))................................ (-15.57 = -15.45 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:21 2006