Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,081,724 – 9,081,821 |
Length | 97 |
Max. P | 0.512747 |
Location | 9,081,724 – 9,081,821 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 86.90 |
Mean single sequence MFE | -27.68 |
Consensus MFE | -23.25 |
Energy contribution | -23.38 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.36 |
Structure conservation index | 0.84 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512747 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9081724 97 + 20766785 CCACAGAGUCCACAUCCGCUUAACGUAACGAUCGAGGAUCUCGUUAAGAGCAACUGCGACCAAUGUGGAGUGGAGUAGAGCGGCAACACCGCUGGAA ((....(.(((((.(((((((((((....((((...)))).))))))..((....)).......)))))))))).)..(((((.....))))))).. ( -31.50) >DroSec_CAF1 46494 84 + 1 CCACAGAGUCCACAUCCGUUUAACGUAACGAUCGAGGAUCUCGUUAAGAGCAACUGCAACCA--GUGGAGUGGAGUAGAG-----------CUGGAA ((((..(.(((((.(((.(((((((....((((...)))).)))))))....((((....))--)))))))))).)...)-----------.))).. ( -22.90) >DroSim_CAF1 48764 84 + 1 CCACAGAGUCCACAUCCGUUUAACGUAACGAUCGAGGAUCUCGUUAAGAGCCACUGCAACCA--GUGGAGUGGAAUAGAG-----------CUGGAA ...(((..(((((.....(((((((....((((...)))).)))))))..((((((....))--)))).)))))......-----------)))... ( -25.10) >DroEre_CAF1 53903 95 + 1 CCACAGAGUCCACAUCCGUUUAACGUAACGAUCGAGGAUCUCGUUAAGAGCAACUGCAGCCA--CUGGAGUGGAGUGGAGUGGCACCGCCGCUGGAA ((((....(((((.(((.(((((((....((((...)))).))))))).((....)).....--..))))))))))))((((((...)))))).... ( -31.20) >consensus CCACAGAGUCCACAUCCGUUUAACGUAACGAUCGAGGAUCUCGUUAAGAGCAACUGCAACCA__GUGGAGUGGAGUAGAG___________CUGGAA ((......(((((.(((.(((((((....((((...)))).))))))).((....)).........))))))))....(((((.....))))))).. (-23.25 = -23.38 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:15 2006