Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,078,678 – 9,078,793 |
Length | 115 |
Max. P | 0.993414 |
Location | 9,078,678 – 9,078,793 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.26 |
Mean single sequence MFE | -33.80 |
Consensus MFE | -24.46 |
Energy contribution | -23.90 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.22 |
Mean z-score | -3.26 |
Structure conservation index | 0.72 |
SVM decision value | 2.40 |
SVM RNA-class probability | 0.993414 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9078678 115 + 20766785 AUCUUCAUUAAGGGAAAGGAAAAAUAUUUCCACAACUGAUGCUGCACACCACUCGGCCUGACCUUUGCUUGUUUAGAAAUUAAG-----UCAAAGGUCACAAAAGUGUAGCAUUUGAACA ...((((..........(((((....)))))......((((((((((.((....))..(((((((((((((.........))))-----.))))))))).....)))))))))))))).. ( -34.70) >DroSec_CAF1 43511 115 + 1 AUCUUUAUGAAAGGGAAGGAAAAAUAUUUCCACAACGGAUGCUGCACACCACUCGGCCUGACCUUAGCUUGUUUAGAAAUUGAG-----UCAAAGGUCACAAAAGUGUAGCAUUUGAACA .(((((.....))))).(((((....)))))....((((((((((((.((....))..(((((((.(((((.........))))-----)..))))))).....)))))))))))).... ( -33.70) >DroEre_CAF1 50930 119 + 1 UUCCUAAUCCAAGGGA-GCGGAAAUAUUUCCACAUCUGAUGCUGCACACCUCCCAGCCUGACCUUUGCUUGCUUAGAAAUGUAGAAAUGCCAAAGGUCACGAAAGUGUAGCAUUUUAACA (((((......)))))-(.((((....)))).)....((((((((..............(((((((((...((((....)).))....).))))))))((....))))))))))...... ( -32.30) >DroYak_CAF1 48599 115 + 1 UUCUUAAUCCAAGGGAAGGAGAAAUAUUUCCAUGUCUGAUGCUGCACUCCACACAGCCUGACCUUUGCUUAUUUAGAAAUGGAG-----UCAAAGGUCACGAAAGUGUAGCAUUUGAACA (((((..(((...)))..)))))...........((.(((((((((((........(.(((((((((....((((....)))).-----.))))))))).)..))))))))))).))... ( -34.50) >consensus AUCUUAAUCAAAGGGAAGGAAAAAUAUUUCCACAACUGAUGCUGCACACCACUCAGCCUGACCUUUGCUUGUUUAGAAAUGGAG_____UCAAAGGUCACAAAAGUGUAGCAUUUGAACA .((((......))))..(((((....)))))......((((((((((.(......)..(((((((((....(((.......)))......))))))))).....))))))))))...... (-24.46 = -23.90 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:11 2006