Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,075,810 – 9,075,920 |
Length | 110 |
Max. P | 0.523636 |
Location | 9,075,810 – 9,075,920 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.47 |
Mean single sequence MFE | -31.58 |
Consensus MFE | -22.18 |
Energy contribution | -22.54 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.11 |
Mean z-score | -1.69 |
Structure conservation index | 0.70 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523636 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9075810 110 + 20766785 UAAAAAACACACCCAAAUCUCAAGUGGAAAAUGA-------AAACCCGGAGAAGACCAGCUGUGGGAGUGAGUAGGCAAG---CCCUUUGCCCUUUCCCACUUUCAGCUAGAGCAAGUGA .......(((...........((((((.......-------...((((.((........)).))))...(((..((((((---...))))))..)))))))))...((....))..))). ( -26.80) >DroSec_CAF1 40769 109 + 1 UAAAAACCACACCCAAAUCUCAAGUGGAAAGUAA-------AAAC-CGCAGAAGACCAGCUGCAGGAGCGAGUAGGCAAG---CCCUUCGCCCUUUCCCACUUUCAGCUGGAGCAAGUGA .........(((......(((.(((.((((((..-------....-.((((........))))(((.(((((..((....---)).)))))))).....)))))).))).)))...))). ( -29.00) >DroSim_CAF1 42565 108 + 1 -AAGAACCACACCCAAAUCUCAAGUGGAAAGUAA-------AAAC-CGCAGAAGACCAGCUGUGGGAGCGAGUAGGCAAG---CCCUUCGCCCUUUCCCACUUUCAGCUGGAGCAAGUGA -......(((.......(((...((((.......-------...)-)))...)))(((((((((((((((((..((....---)).)))))....))))))....)))))).....))). ( -32.20) >DroEre_CAF1 48105 108 + 1 UAAAAACCACGCCCAAAUCUCAAGUGGAAAGUGA-------AAAC-CAGAGAAGACCAGCUGUGGGAGCGAGUAGGCAAG---CCCUUUGCCCUUUC-CACUUUCAGCUAGAGCGAGCGA .........(((.(....(((.(((.(((((((.-------...(-((.((........)).)))....(((..((((((---...))))))..)))-))))))).))).))).).))). ( -30.90) >DroYak_CAF1 43815 118 + 1 UGUAAACCACACCCAAAUCUCAAGUGGAAAGUGAAAAAUGAAAAG-CAGAGAAGACCAGCUGUGGGAGCGGGUAGGCAAGUGGCCCUUUGCCCUUUC-CACUUUCCGCUAGAGCGAGUGA .........(((.(....(((.(((((((((((......((((.(-(((((...(((.(((.....))).))).(((.....)))))))))..))))-))))))))))).))).).))). ( -39.00) >consensus UAAAAACCACACCCAAAUCUCAAGUGGAAAGUGA_______AAAC_CGGAGAAGACCAGCUGUGGGAGCGAGUAGGCAAG___CCCUUUGCCCUUUCCCACUUUCAGCUAGAGCAAGUGA .........(((......(((.(((.(((((((.........................(((.....)))(((..((((((......))))))..))).))))))).))).)))...))). (-22.18 = -22.54 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:03 2006